| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1318 |
|---|
| Symbol | |
|---|
| ID | 6408975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1387115 |
|---|
| End bp | 1387864 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642711217 |
|---|
| Product | AzlC family protein |
|---|
| Protein accession | YP_001990333 |
|---|
| Protein GI | 192289728 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1296] Predicted branched-chain amino acid permease (azaleucine resistance) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTC ACGTCCCCAA GGCGCCGGCC TATTGGTCGC GCGACGCAAT CTGGCCCGGC
ATCGTCGCGG TCGGGCCGAT GCTGCCCGGC ACGCTGGCGT TCGGCATGGC GTTCGGCGCG
CTGTGTGCGC AGAAGAACTT CACGCTGGCC GAGGTCGAAG TGATGATGGC CACCGTCTAT
GGAGGACTGT CGCAGTTCGT CGCGGTCCAG GCTTGGCCAG ATCAGCTGAC GCCGTCGACG
ATCGCAGCGC TGGCGCTGCT CACCACCACC GTCAACATCC GCTTCTTCCT GATGACGGCG
TCGATGCGGC CGTGGTTCGG CACGCTGCCG GCGTGGCAGG CTTATCCGCC GCTGCTGCTG
GTCACCGATG GCGGATGGCT CGCAGCGATG CGTTATCGTG AACATGGCGG CGCCAATGCC
TGGTTCTACC TCGGCGGCGC GTTGGTTCTG TATCTTGTGT GGCTGGTGTC GGCGATTCCG
GGTTTTCTGC TCGCCGAACA GCTCGCTGAT CCGAAGAAGT TCGGCGTCGA CATCGCGATG
CCGGCGTTCT TCGCGGCGCT CTTGGTACCA GCCTGGAAGG GGCCGCGCCG GGCGATTCCT
TGGCTCGTGT CGGGGATCGT CGCCCTGACG GTGCATTGGC TGATCCCGGG CTATTGGTTC
ATCATTGCCG GCGCGCTGTC AGGTGCGATC ACTGCCGGAC TGATGGATGA GCCGCCAGTG
GCGACGTCCC ACGCGGGGCA TTCGTCATGA
|
|---|
| Protein sequence | MTTHVPKAPA YWSRDAIWPG IVAVGPMLPG TLAFGMAFGA LCAQKNFTLA EVEVMMATVY
GGLSQFVAVQ AWPDQLTPST IAALALLTTT VNIRFFLMTA SMRPWFGTLP AWQAYPPLLL
VTDGGWLAAM RYREHGGANA WFYLGGALVL YLVWLVSAIP GFLLAEQLAD PKKFGVDIAM
PAFFAALLVP AWKGPRRAIP WLVSGIVALT VHWLIPGYWF IIAGALSGAI TAGLMDEPPV
ATSHAGHSS
|
|---|
| |