Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1312 |
Symbol | |
ID | 6408969 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1378448 |
End bp | 1380778 |
Gene Length | 2331 bp |
Protein Length | 776 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642711211 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001990327 |
Protein GI | 192289722 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGCTTG CCAGCCAGAA ACGGAACTCC GAGCAAACGT CGCCTGCGAT TCGCGCGGGC TTGGTCGACT CGTTGTTCAT GAATCCGGCG CCGATGATTG TCGGAGCGTT CGGGCCTGCG ATTGCCGGCG CGGTCATCGG GTTGGTCACT GGAAGCATCC TGAACTGGCT GTGCGTCCCG TTGTTCGTTC TCATCGGCTT CGCGCGGGCC GTGCAGATGC GTCGCTATCA GCAGCGCAAC GCTCCGCTGA CGGTGGAGGA GGCCGACGTC TGGGAGCGTC GCTATCGCTT GGGAGCGATC GCTCACGGTA TCTCGCTCGG AGCCTGGTCG CTGGTGGTCT TGCTCGGTAC CGACGACTCG GCCGCGCATA TGCTGTGCGT CGCGACTGTG GTGGCATATA CTTCGGCGGG TGTTGGACGG ACCTTTGGCC GCCCCCAGAT CTTCCATCTG CAGGTGCTGC TGAGCTGTGG TCCACTGATC TTCGCGATGG TGAGGGTCGG CGGGGTCTAT TATCTCACGC TGGCGTTGCT CAGTGCGGTG TTCTTTATCT CGATCCGTCA TCTGACATCG AGCCTGCAGC GAATCTATCT CAACGCCTGG ATCGGCCGGG AGCGCGAGGC TGCACTGGCC AACCAGTTCG ACACCGCGCT GAACAACATG CCGCACGGGT TGTGCATGTT CCGCGCCGAC GGCCGCCTCG CTGTGATGAA CCATCGCTTT GCCGAGATGA TGCGGCTCCG GGACGAACTG GTCAAAGGCT CGCCCACCGC GACCGAAATC GTATCCGCGT GCGTAGCGAT CGGCGCGATT TCAGCAGCGA GTGGCCGCCT GATCCTGTCG GAGATAGAGA GCGCGCTCGC GGGCGAGATC GTTACGGTCG GCGATGAGAC GATTCCCCGG TCCTTGTGCT GGACATTCCA GCCGATGGCG GACGGCGGCG CCGTGGTGCT GATCGAAGAT ATCACCGAGC GTCGCAACGC CGAAGCGCGG ATCGTTCATC TTGCGCGTTA CGACGAGCTC ACGGCGCTGC CGAACCGGGT CAGCTTCCGG GACGAAATCG AGCGCATTCT TGAGGCCGAG CACGGCAGGG GCAAGACCCG GCTTTCGGCG CTGTTGTTCA TCGACCTCGA CCAGTTCAAG CAGATCAACG ACACGCTCGG CCATCCATGC GGCGATCGGC TGCTGTGCTC CGTTGCCGAA CGGCTGCGTG ACATGCTGCG GCCGGACGAT TATGTGGCGC GATTCGGTGG CGATGAATTC GTCGTCTTCC AGCAGAACAT CGCCTCGAAC GAAGATGCTG CGGCGCTGGC TCGCCGAATC GTCGATCGGC TCAGCGACCG CTATCTGATC GATCATCACG TTGTTGAGAT CGGTGCCTCG ATCGGCATTG CGATGACGTC GCCGGGCACT AAGGCCGACA TCCTTCTCAA GAATGCCGAT ATGGCGCTGT ATCGCGCCAA GGCCGACGGC CGCGGCAATT ACTGCTTCTT CCGCGAGGAA ATGGCGCAAA CCGTCGAGGC CCGCCGCATC CTCGAGCTCG ATCTGCGCAA GGCGCTCGCC AACGAAGAAT TTGAGCTGTA CTACCAGCCG CTGGTGAATC TCAAATCCGG CAAGATCACC ACCTGCGAAG CGCTGCTGCG CTGGAATCAC CCGGTGCGCG GGACGGTATC ACCGGTCGAT ATTATTCCGG TCGCCGAGGA CATGGGGCTG ATCGTCGACC TCGGTCGCTG GATTCTGCGC AAAGCATGCA TGGAATGCAT GCTTTGGCCG GAGCCGGTAA GTGTCGCGAT CAACTTCTCT CCGCAGCAGT TCCATCAGCG TGACGTGCTG ACAGAAGTGC GGTACGCGCT TGAAGTTTCC GGCCTGCCTG CCAGCCGGCT GGAGATCGAA ATCACCGAAT CCTCGTTGCT GCGGAATACG CAGTGGACGC ACGACGCGTT GCAGCAGCTT CACGCCGAAG GCGTTCGAAT CTCGCTCGAC GATTTCGGCA CGGGCTATTC GTCACTCAGC TATCTGCACA GCTTCCCTTT GCAGAAGGTG AAGATCGACC GCTCGTTCCT CGAGGGGATC GACAGCGACC GGCCGCTGAC TCTGTTGCGC GGCGTCGCTC GTCTCAGCAG CGATCTTGGC ATGTCGGTGG TCGTGGAAGG CATCGAAACC AACGAGCAGC TCGAATTGAT CAGCGCCGAC GGCACCGTCA CCGAGGCGCA GGGCTATCTG TTCAGCCGTC CGGTCCCCGC CCAGCGCATT CGGCAATTGC TGAACGCGTC GCAGGGGGTG CGCCAAAAAG ACGGCAAAGT GCTTTCTTTG CCGACGCGAT CGATCGCCTA A
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Protein sequence | MQLASQKRNS EQTSPAIRAG LVDSLFMNPA PMIVGAFGPA IAGAVIGLVT GSILNWLCVP LFVLIGFARA VQMRRYQQRN APLTVEEADV WERRYRLGAI AHGISLGAWS LVVLLGTDDS AAHMLCVATV VAYTSAGVGR TFGRPQIFHL QVLLSCGPLI FAMVRVGGVY YLTLALLSAV FFISIRHLTS SLQRIYLNAW IGREREAALA NQFDTALNNM PHGLCMFRAD GRLAVMNHRF AEMMRLRDEL VKGSPTATEI VSACVAIGAI SAASGRLILS EIESALAGEI VTVGDETIPR SLCWTFQPMA DGGAVVLIED ITERRNAEAR IVHLARYDEL TALPNRVSFR DEIERILEAE HGRGKTRLSA LLFIDLDQFK QINDTLGHPC GDRLLCSVAE RLRDMLRPDD YVARFGGDEF VVFQQNIASN EDAAALARRI VDRLSDRYLI DHHVVEIGAS IGIAMTSPGT KADILLKNAD MALYRAKADG RGNYCFFREE MAQTVEARRI LELDLRKALA NEEFELYYQP LVNLKSGKIT TCEALLRWNH PVRGTVSPVD IIPVAEDMGL IVDLGRWILR KACMECMLWP EPVSVAINFS PQQFHQRDVL TEVRYALEVS GLPASRLEIE ITESSLLRNT QWTHDALQQL HAEGVRISLD DFGTGYSSLS YLHSFPLQKV KIDRSFLEGI DSDRPLTLLR GVARLSSDLG MSVVVEGIET NEQLELISAD GTVTEAQGYL FSRPVPAQRI RQLLNASQGV RQKDGKVLSL PTRSIA
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