| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1299 |
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| Symbol | |
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| ID | 6408956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1367941 |
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| End bp | 1369209 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642711198 |
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| Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_001990314 |
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| Protein GI | 192289709 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.831736 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATC TCGCCTGGAT CGAGACCGCG ATCACCGCGG CGCGGCCTCA GGCGATCGGC
GCGCTGCTGC GCTACTTCCG CGATCTCGAC ACCGCCGAGG AGGCGTTCCA GAACGCCTGC
CTGCGGGCGC TGAAAGCCTG GCCGCAGAAT GGGCCGCCGC GTGACCCCAC AGCGTGGCTG
ATCATGGTCG GCCGCAATGT TGCGATCGAT GATCTGCGCC GCGGCACAAA GCAACAGCCG
CTTCCTGATG ACGCGGTGAT TTCCGATCTC GACGATGCCG AGGACGCGCT CGCCGAGCGG
CTCGACGGCT CGCACTATCG CGACGACATC CTGCGGCTGC TGTTCATCTG CTGTCACCCC
GAGCTGCCGC CGACCCAGCA GATCGCACTG GCGCTGCGCA TCGTCTCGGG ACTGACCGTG
CCGCAGATCG CGCGGGCGTT CCTGGTGACC GATGCGGCGA TGGAGCAGCG CATCACCCGC
GCCAAGGCCA AGGTCGCGCG GGCCGGCGTG CCGTTCGAGA CCCCCGGCGC GGTCGAGCGC
GCCGAGCGTC TCGGCGCGGT GGCGGCGATG ATCTACCTCC TCTTCAACGA GGGCTATTCG
GCCGCGGGCG AGACCGCCGG GGTCCGCGCG CCGCTGTGCG AGGAGGCGAT CCGGCTGGCG
CGGCTGTTGC TGCGGCTGTT TCCGTCCGAG CCGGAGATCA TGGGGCTGAC GGCGCTGATG
CTGCTACAGC ACGCCCGGGC GCCAGCGCGG TTCGATTCCG GCGGCACGAT CGTGCTGCTG
GAGGATCAGG ACCGTAGCTT GTGGAACGGC ACGATGATCG CCGAGGGGCT GGCGCTGATC
GACAAGGCGA TGCGTCACCG CCGCACCGGC GCGTATCAGA TCCAGGCGGC GATCGCCGCG
CTGCACGCAC GCGCGCCGCG CTATGAGGAC ACGGACTGGG CGCAGATCGA TCTGCTGTAC
GGCTCGCTCG AAATCCTGCA GCCGTCACCG GTGATCACGC TCAACCGCAC GGTGGCGGTG
GCCAAGCTGC GCGGACCGGA AGTGGCGCTG GCGATGATCG CCCCACTCGA AGCCCGGCTC
GGCAGTTACT TTCATTACTT CGGTGCCAAA GGCGCCCTAC TGCTGCAGCA AGGACGCTGC
GACGAAGCGC GCACCGCGTT CGACCGGGCG ATCGCCCTTG CCCGCACTCC GGCCGAGGTC
TCGCACATCC GGATGCATCT CGACCGGCTG ATGCGGGAGG CCGACGCGGC CGGGCGTGCG
AGCGCGTAG
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| Protein sequence | MTDLAWIETA ITAARPQAIG ALLRYFRDLD TAEEAFQNAC LRALKAWPQN GPPRDPTAWL
IMVGRNVAID DLRRGTKQQP LPDDAVISDL DDAEDALAER LDGSHYRDDI LRLLFICCHP
ELPPTQQIAL ALRIVSGLTV PQIARAFLVT DAAMEQRITR AKAKVARAGV PFETPGAVER
AERLGAVAAM IYLLFNEGYS AAGETAGVRA PLCEEAIRLA RLLLRLFPSE PEIMGLTALM
LLQHARAPAR FDSGGTIVLL EDQDRSLWNG TMIAEGLALI DKAMRHRRTG AYQIQAAIAA
LHARAPRYED TDWAQIDLLY GSLEILQPSP VITLNRTVAV AKLRGPEVAL AMIAPLEARL
GSYFHYFGAK GALLLQQGRC DEARTAFDRA IALARTPAEV SHIRMHLDRL MREADAAGRA
SA
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