Gene Rpal_1250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1250 
Symbol 
ID6408906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1326940 
End bp1329621 
Gene Length2682 bp 
Protein Length893 aa 
Translation table11 
GC content68% 
IMG OID642711148 
Producthypothetical protein 
Protein accessionYP_001990265 
Protein GI192289660 
COG category[S] Function unknown 
COG ID[COG5373] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.373819 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGAGC TACTGGCTTT TGCGATCGCC ATCATCGCCT TGGTGATCGC CCGCAAGACG 
CAGACCCAGA TCCTTCAGCT GCGCGCCCGG CTCGACGCGC TGACCGCAGG ACAGCCCCTC
CCCGCGACGC CCCAAGCCGC CACGGCTGCC CCCATCGCGA TCAACGAGGC TCCGCTGGCT
CCTGGGGCCG AGGCCGCGCC AGAGATTGCC GCGACGATTG CCATCGAACC ATCATCGCCT
GACACAACGG CCACTCCCGC GGCGGAGGCG GTCGCAGAAG CTGCGAAGCC CGGCTTCGAG
GAGCAGATCG GCACCCGCTG GGTGGTGTGG ATCGGCGGCC TGACGCTGGC GCTCGGCGGC
TTCTTCATGG TGCGCTACTC GATCGAGCAG GGCCTGCTCG GTCCCGGCGT TCGGGTACTG
CTGGGCGGTC TGTTCGCGCT GGCACTGCTG ATCGCCGGCG AAGTCACGCG CCGCAAGGAA
AGCGTCGCGC AGCTCGCCGC GCTGCCGATC GCCAACATCC CGGCGATCCT CACAGCGGCC
GGCACTGCGG TGGCATTCGC GACCGTGTAT GCGTCCTACG CGCTGTATGA TTTCCTCGCG
CCCGCGACCG CCTTCATCCT ACTCGGCCTT GTCGCGCTCG GCACGCTCGC CGCAGCACTG
CTCCACGGAC CGGCACTCGC CGGGCTCGGC GTCGTCGCCG GTTTTGCGAC GCCCGTGTTG
GTATCGTCGG GCGAGCCCGA CTACTGGGCG CTCTACATCT ACCTTGCGGT CATCACCGCC
GCCTCGTTCG CGCTCGCCCG TATCCGGCTG TGGCGCTGGC TGGCGGTGAC GACGGTCATT
CTCGCCCTGT TGTGGACGCT GCCCGGCCTC GAAGGCGCCG CGACGCTGAT CGCACCGCAC
GCCTTCCACG TCATCGCCGG CTTCACGCTG GCGATGCTGC TGGTGGTATG CGGTCTGCTG
TTCGGACCGT CGATCGAGCC GGGCCGGATC GAACCGGTCT CATCGGCAGC GCTCGCGACC
TATCTGCTCG GCGCCGCGCT GATCGTGGTG GCCAGCACGC ACAGCGATGC GGCGCTGATC
GTGTTCGCGG GGCTGGTCGC CGCAACGCTC GGCATCGCCT GGCGCGCCGC GGCCGCCACC
GCTGCGGTCG GCGCTGCGGC AGGCTTGGTC GGTTTGGTGT TCCTGTCGTG GGTGGTGCGC
GGCAGTCCCG AGCTCCTTGT CCTTCCGGGC GGAGCGCTAC CGGGCATTGG CGCTGATCCG
CTGTCGGGTC CGGTGACGAC GCATCTGATC GCCGCCGCGG TGTTCGGCCT CGGCTTCGCC
GGCTTCGGCA TCCTGGCGCA GGGACGATCT CCGAGCGCAG CCGTGCCGGT GATCTGGGCC
GCAGCTGGCG TATTCACGCC GCTGGCGCTG CTGATCGCGC TGTATGCGCG TATCGCGCAT
CTCGATCGCT CAATTCCGTT CGCGATTGTC GCGGTCGTGC TCGCCGCTGT GTTTGGCTTC
GCCACCGAGC ATCTCAGCAA GCGCGACAAT CGGCCGGGAC TGCCGATCTC GATCGCGCTG
TTTGCGACCG GGACGCTCGG CGCGCTGGCG CTGGCGCTGA CCTTCGCGCT GGAGAAGGGC
TGGCTCACCA TCGCGCTGGC GCTGATGGCG GCAGGCACCG CGTGGATCTC GCTGCAGCGG
CCGATCCCGT TCCTGCGCTG GCTCGCCGCG ATCCTCGCCG GCATCGTCGT GGCGCGGATC
GGCTACGAGC CGCGCATAAT CGGCGACGCG GTCGGCACCA CGCCGGTGTT CAACTGGCTG
CTGTGGGGCT ACGGCGTGCC GGCAGCCTCG TTCTGGCTGG CCAGCATCTG GATGCGCCGA
CGCGGCGATG ATGCGCCGTT GCGCATGATG GAATCCGCCG CAATCCTGTT CACCGTGCTG
CTGGCCTTCA TGGAAATCCG CCACGCCGTG AATGGCGGCG ACGTCTATCG CGATAGCGCA
GGTCTGACAG AAGTCGCCCT GCAGGTCTGC GTCACGCTGG CGATGGCAAT CGGCCTGGAA
CGGTTGCGGC TGCGCAGCCA CAGCCCGGTC CACAACATCG CTGCGATCCT GCTCGCGATC
TTCGCTGCGC TGGGCAGCGT GTTTGGCCTG CTGCTGTGGG AGAACCCGAC GTTCTGGGCC
ACCGAAGTCG GCGGGCTCAT CATCAACCGC CTCGTACTCG CCTACGCGCT GCCGGCCGTG
CTGGCGCTGC TGCTGTCCTA TGCGGTCGCA GGCGTGCGGC GTCCGGCCTA CGGCAACGGC
TTCGCCGCGC TGGCGCTGAT CATGGGGCTC GCTTACGTGA CGCTGCAGGT GCAGCGCGTG
TATCACGGCC CGATCCTGGC CTACGGGCCG ACCACCGATG CCGAACAATA CACCTACTCG
GTGGCGTGGC TGATCTGCGG CGTGCTGCTG CTCGGTGCCG GCCTGCTGTT CAACTCACAG
CGCGCGCGGC TGGCATCGGC GGTGGTGATC GGGCTCACCG TGCTGAAGGT GTTCGTGATC
GACATGTCGA CGCTGACCGG TGTGTACCGG GCGCTGTCGT TCATGGGACT GGGCGTGGTG
CTGGTGGCAA TCGGATGGCT ATATCAGCGC ATCCTGTTCC GGCCGCGCAG CACACCGGCT
GCGGACGCGC CATTGCAAGC TCCGCCATCG GCGGAGGCTT AA
 
Protein sequence
MFELLAFAIA IIALVIARKT QTQILQLRAR LDALTAGQPL PATPQAATAA PIAINEAPLA 
PGAEAAPEIA ATIAIEPSSP DTTATPAAEA VAEAAKPGFE EQIGTRWVVW IGGLTLALGG
FFMVRYSIEQ GLLGPGVRVL LGGLFALALL IAGEVTRRKE SVAQLAALPI ANIPAILTAA
GTAVAFATVY ASYALYDFLA PATAFILLGL VALGTLAAAL LHGPALAGLG VVAGFATPVL
VSSGEPDYWA LYIYLAVITA ASFALARIRL WRWLAVTTVI LALLWTLPGL EGAATLIAPH
AFHVIAGFTL AMLLVVCGLL FGPSIEPGRI EPVSSAALAT YLLGAALIVV ASTHSDAALI
VFAGLVAATL GIAWRAAAAT AAVGAAAGLV GLVFLSWVVR GSPELLVLPG GALPGIGADP
LSGPVTTHLI AAAVFGLGFA GFGILAQGRS PSAAVPVIWA AAGVFTPLAL LIALYARIAH
LDRSIPFAIV AVVLAAVFGF ATEHLSKRDN RPGLPISIAL FATGTLGALA LALTFALEKG
WLTIALALMA AGTAWISLQR PIPFLRWLAA ILAGIVVARI GYEPRIIGDA VGTTPVFNWL
LWGYGVPAAS FWLASIWMRR RGDDAPLRMM ESAAILFTVL LAFMEIRHAV NGGDVYRDSA
GLTEVALQVC VTLAMAIGLE RLRLRSHSPV HNIAAILLAI FAALGSVFGL LLWENPTFWA
TEVGGLIINR LVLAYALPAV LALLLSYAVA GVRRPAYGNG FAALALIMGL AYVTLQVQRV
YHGPILAYGP TTDAEQYTYS VAWLICGVLL LGAGLLFNSQ RARLASAVVI GLTVLKVFVI
DMSTLTGVYR ALSFMGLGVV LVAIGWLYQR ILFRPRSTPA ADAPLQAPPS AEA