Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1250 |
Symbol | |
ID | 6408906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 1326940 |
End bp | 1329621 |
Gene Length | 2682 bp |
Protein Length | 893 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642711148 |
Product | hypothetical protein |
Protein accession | YP_001990265 |
Protein GI | 192289660 |
COG category | [S] Function unknown |
COG ID | [COG5373] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.373819 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGAGC TACTGGCTTT TGCGATCGCC ATCATCGCCT TGGTGATCGC CCGCAAGACG CAGACCCAGA TCCTTCAGCT GCGCGCCCGG CTCGACGCGC TGACCGCAGG ACAGCCCCTC CCCGCGACGC CCCAAGCCGC CACGGCTGCC CCCATCGCGA TCAACGAGGC TCCGCTGGCT CCTGGGGCCG AGGCCGCGCC AGAGATTGCC GCGACGATTG CCATCGAACC ATCATCGCCT GACACAACGG CCACTCCCGC GGCGGAGGCG GTCGCAGAAG CTGCGAAGCC CGGCTTCGAG GAGCAGATCG GCACCCGCTG GGTGGTGTGG ATCGGCGGCC TGACGCTGGC GCTCGGCGGC TTCTTCATGG TGCGCTACTC GATCGAGCAG GGCCTGCTCG GTCCCGGCGT TCGGGTACTG CTGGGCGGTC TGTTCGCGCT GGCACTGCTG ATCGCCGGCG AAGTCACGCG CCGCAAGGAA AGCGTCGCGC AGCTCGCCGC GCTGCCGATC GCCAACATCC CGGCGATCCT CACAGCGGCC GGCACTGCGG TGGCATTCGC GACCGTGTAT GCGTCCTACG CGCTGTATGA TTTCCTCGCG CCCGCGACCG CCTTCATCCT ACTCGGCCTT GTCGCGCTCG GCACGCTCGC CGCAGCACTG CTCCACGGAC CGGCACTCGC CGGGCTCGGC GTCGTCGCCG GTTTTGCGAC GCCCGTGTTG GTATCGTCGG GCGAGCCCGA CTACTGGGCG CTCTACATCT ACCTTGCGGT CATCACCGCC GCCTCGTTCG CGCTCGCCCG TATCCGGCTG TGGCGCTGGC TGGCGGTGAC GACGGTCATT CTCGCCCTGT TGTGGACGCT GCCCGGCCTC GAAGGCGCCG CGACGCTGAT CGCACCGCAC GCCTTCCACG TCATCGCCGG CTTCACGCTG GCGATGCTGC TGGTGGTATG CGGTCTGCTG TTCGGACCGT CGATCGAGCC GGGCCGGATC GAACCGGTCT CATCGGCAGC GCTCGCGACC TATCTGCTCG GCGCCGCGCT GATCGTGGTG GCCAGCACGC ACAGCGATGC GGCGCTGATC GTGTTCGCGG GGCTGGTCGC CGCAACGCTC GGCATCGCCT GGCGCGCCGC GGCCGCCACC GCTGCGGTCG GCGCTGCGGC AGGCTTGGTC GGTTTGGTGT TCCTGTCGTG GGTGGTGCGC GGCAGTCCCG AGCTCCTTGT CCTTCCGGGC GGAGCGCTAC CGGGCATTGG CGCTGATCCG CTGTCGGGTC CGGTGACGAC GCATCTGATC GCCGCCGCGG TGTTCGGCCT CGGCTTCGCC GGCTTCGGCA TCCTGGCGCA GGGACGATCT CCGAGCGCAG CCGTGCCGGT GATCTGGGCC GCAGCTGGCG TATTCACGCC GCTGGCGCTG CTGATCGCGC TGTATGCGCG TATCGCGCAT CTCGATCGCT CAATTCCGTT CGCGATTGTC GCGGTCGTGC TCGCCGCTGT GTTTGGCTTC GCCACCGAGC ATCTCAGCAA GCGCGACAAT CGGCCGGGAC TGCCGATCTC GATCGCGCTG TTTGCGACCG GGACGCTCGG CGCGCTGGCG CTGGCGCTGA CCTTCGCGCT GGAGAAGGGC TGGCTCACCA TCGCGCTGGC GCTGATGGCG GCAGGCACCG CGTGGATCTC GCTGCAGCGG CCGATCCCGT TCCTGCGCTG GCTCGCCGCG ATCCTCGCCG GCATCGTCGT GGCGCGGATC GGCTACGAGC CGCGCATAAT CGGCGACGCG GTCGGCACCA CGCCGGTGTT CAACTGGCTG CTGTGGGGCT ACGGCGTGCC GGCAGCCTCG TTCTGGCTGG CCAGCATCTG GATGCGCCGA CGCGGCGATG ATGCGCCGTT GCGCATGATG GAATCCGCCG CAATCCTGTT CACCGTGCTG CTGGCCTTCA TGGAAATCCG CCACGCCGTG AATGGCGGCG ACGTCTATCG CGATAGCGCA GGTCTGACAG AAGTCGCCCT GCAGGTCTGC GTCACGCTGG CGATGGCAAT CGGCCTGGAA CGGTTGCGGC TGCGCAGCCA CAGCCCGGTC CACAACATCG CTGCGATCCT GCTCGCGATC TTCGCTGCGC TGGGCAGCGT GTTTGGCCTG CTGCTGTGGG AGAACCCGAC GTTCTGGGCC ACCGAAGTCG GCGGGCTCAT CATCAACCGC CTCGTACTCG CCTACGCGCT GCCGGCCGTG CTGGCGCTGC TGCTGTCCTA TGCGGTCGCA GGCGTGCGGC GTCCGGCCTA CGGCAACGGC TTCGCCGCGC TGGCGCTGAT CATGGGGCTC GCTTACGTGA CGCTGCAGGT GCAGCGCGTG TATCACGGCC CGATCCTGGC CTACGGGCCG ACCACCGATG CCGAACAATA CACCTACTCG GTGGCGTGGC TGATCTGCGG CGTGCTGCTG CTCGGTGCCG GCCTGCTGTT CAACTCACAG CGCGCGCGGC TGGCATCGGC GGTGGTGATC GGGCTCACCG TGCTGAAGGT GTTCGTGATC GACATGTCGA CGCTGACCGG TGTGTACCGG GCGCTGTCGT TCATGGGACT GGGCGTGGTG CTGGTGGCAA TCGGATGGCT ATATCAGCGC ATCCTGTTCC GGCCGCGCAG CACACCGGCT GCGGACGCGC CATTGCAAGC TCCGCCATCG GCGGAGGCTT AA
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Protein sequence | MFELLAFAIA IIALVIARKT QTQILQLRAR LDALTAGQPL PATPQAATAA PIAINEAPLA PGAEAAPEIA ATIAIEPSSP DTTATPAAEA VAEAAKPGFE EQIGTRWVVW IGGLTLALGG FFMVRYSIEQ GLLGPGVRVL LGGLFALALL IAGEVTRRKE SVAQLAALPI ANIPAILTAA GTAVAFATVY ASYALYDFLA PATAFILLGL VALGTLAAAL LHGPALAGLG VVAGFATPVL VSSGEPDYWA LYIYLAVITA ASFALARIRL WRWLAVTTVI LALLWTLPGL EGAATLIAPH AFHVIAGFTL AMLLVVCGLL FGPSIEPGRI EPVSSAALAT YLLGAALIVV ASTHSDAALI VFAGLVAATL GIAWRAAAAT AAVGAAAGLV GLVFLSWVVR GSPELLVLPG GALPGIGADP LSGPVTTHLI AAAVFGLGFA GFGILAQGRS PSAAVPVIWA AAGVFTPLAL LIALYARIAH LDRSIPFAIV AVVLAAVFGF ATEHLSKRDN RPGLPISIAL FATGTLGALA LALTFALEKG WLTIALALMA AGTAWISLQR PIPFLRWLAA ILAGIVVARI GYEPRIIGDA VGTTPVFNWL LWGYGVPAAS FWLASIWMRR RGDDAPLRMM ESAAILFTVL LAFMEIRHAV NGGDVYRDSA GLTEVALQVC VTLAMAIGLE RLRLRSHSPV HNIAAILLAI FAALGSVFGL LLWENPTFWA TEVGGLIINR LVLAYALPAV LALLLSYAVA GVRRPAYGNG FAALALIMGL AYVTLQVQRV YHGPILAYGP TTDAEQYTYS VAWLICGVLL LGAGLLFNSQ RARLASAVVI GLTVLKVFVI DMSTLTGVYR ALSFMGLGVV LVAIGWLYQR ILFRPRSTPA ADAPLQAPPS AEA
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