| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1230 |
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| Symbol | |
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| ID | 6408886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1301464 |
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| End bp | 1303248 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642711128 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_001990245 |
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| Protein GI | 192289640 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTCCC TTCGAATCCG TCGATCGATG GCCGTCGCTC TCACGCTGGT GGCGATGCCG
ATCGCCGGAC AGGCGCTGGC GCAACCCCCC GATCATCCGG CCGACAACGC GGCGCAGTTT
CCGACCAGCC AGGATCTGCG GTCGATGACG ACCGCCGGCA GCTACCTGGC CGCCCGCCAC
GCCAGCATCG AGCGTGACGC CGCCTCCGCC GCCGCGTTCT ACCGCTCCGC GCTACGCACC
GATCCGAGCA ACAACGAGCT GCTCGACCGC GCCTTCATCT CGTCGCTCGC TGAAGGCGAC
ATCGACGAAG CGGTCAAGCT TGCCGATCGC GTGTTGAAGA TCGACAAGTC CAATCGCGTC
GCCCGGCTGG TGATCGGTAT TCGCGATCTG AAGACCAAGA AATACGCTGC CGCGGTTCGC
AACGTGAACC AGTCGGTGCG CGGCCCGATC ACCGATCTGA TCGCGACCCT GATCTCGAGC
TGGTCGCTGT ACGGCGCCGG TGACGTCAAG AGCGCGGTCG GCAACATCGA CAAGCTGGCC
GGTCCGGAGT GGTATCCGAT CTTCAAGGAT CTGCATTCCG GCATGATGCT GGAACTGGCC
AACCGCCAGA AGGACGCCGG CGAACGGCTG GAGCGCGCCT ACAAGCTCGA CGATTCCGCG
CTGCGCGTGG TCGAGTCCTA TGCGCGCTGG CTGTCGCGCA ACAAGAGCGA GGCCGAGGCG
CTTGCGGTCT ATCAGGCATT CGACAAGAAG CTGCCGCGTC ATCCGCTGAT CGAGGACGGC
ATTCGCGAGG TCAAGGCCGG CAAGAAGCTG TCGCCGCTGG TTGACAGCCC GCAGGCCGGC
GCCGCCGAGG CGCTGTACGG CATCGGCGCG TCGCTGACCC GCCGCGGCGG CGAAGATCTG
GCGCTGGTGT ACCTGCAGCT CGCGCTCTAC CTCGAACCCA ATCATGCACT CGCGCTGCTG
GCGCTCGGCG ATCTCTACGA GTCGGTGAAG AAGCCGCAGA TGGCGATCAA GGTGTATGAG
CGCGTGCCGG CGTCCTCGCC GCTGAAGCGC AACGCCCAGA TCCAGCTCGC CACCGACCTC
GACGCCTCCG ACCGCAGCGA GGAAGCGATC AAGATCCTCA AGGGCGTGAT CGCCGAGGAC
GGCAAGGATC TCGAAGCCAT CATGGCGCTC GGCAATATCG AGCGCGGCCG CAAGAAGTTC
GCCGACTGCG GCGAGACCTA CTCCAAGGGC ATCGATGCGC TCACCGGCGC CGAGAAGAAC
GCCTGGGTGT ATTACTACTT CCGCGGCATC TGCGAGGAGC GCTCCAAGCA GTGGGCCAAG
GCCGAGGTCG ACCTGAAGAA GGCGCTGCAA ATGCAGCCCG ACCAGCCGCA CGTGCTGAAC
TATCTCGGCT ATTCCTGGAT CGATCAGGGC ATCAACCTCG ACGAGGCGAT GACCATGATC
AAGCGCGCGG TCGATCAGCG CCCTGACGAC GGCTACATCG TCGACTCGCT CGGCTGGGCG
TACTACCGCA TCGGCGACTA CGAGAATGCC GTGAAGACGC TGGAGCGGGC GATCGAATTG
AAGCCCGAGG ACCCGACCAT CAACGATCAC CTCGGCGATG CCTATTGGCG CGTCGGCCGT
ACGCTCGAAG CCCGCTTCCA GTGGGCGCAC GCCCGCGACC TCAAGCCCGA TCCGGAGGAG
CTGCCGAAGA TCGAGGCCAA GATCGCCAAC GGTCTGCCCG AAGAGGACAA GGCGTCGGCG
GCGTCCGCGG ACAAGAAGAA AGAAGACGGC AAGGGCGGCG GCTGA
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| Protein sequence | MLSLRIRRSM AVALTLVAMP IAGQALAQPP DHPADNAAQF PTSQDLRSMT TAGSYLAARH
ASIERDAASA AAFYRSALRT DPSNNELLDR AFISSLAEGD IDEAVKLADR VLKIDKSNRV
ARLVIGIRDL KTKKYAAAVR NVNQSVRGPI TDLIATLISS WSLYGAGDVK SAVGNIDKLA
GPEWYPIFKD LHSGMMLELA NRQKDAGERL ERAYKLDDSA LRVVESYARW LSRNKSEAEA
LAVYQAFDKK LPRHPLIEDG IREVKAGKKL SPLVDSPQAG AAEALYGIGA SLTRRGGEDL
ALVYLQLALY LEPNHALALL ALGDLYESVK KPQMAIKVYE RVPASSPLKR NAQIQLATDL
DASDRSEEAI KILKGVIAED GKDLEAIMAL GNIERGRKKF ADCGETYSKG IDALTGAEKN
AWVYYYFRGI CEERSKQWAK AEVDLKKALQ MQPDQPHVLN YLGYSWIDQG INLDEAMTMI
KRAVDQRPDD GYIVDSLGWA YYRIGDYENA VKTLERAIEL KPEDPTINDH LGDAYWRVGR
TLEARFQWAH ARDLKPDPEE LPKIEAKIAN GLPEEDKASA ASADKKKEDG KGGG
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