| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1194 |
|---|
| Symbol | |
|---|
| ID | 6408850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1264702 |
|---|
| End bp | 1265544 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642711092 |
|---|
| Product | modD protein |
|---|
| Protein accession | YP_001990209 |
|---|
| Protein GI | 192289604 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0157] Nicotinate-nucleotide pyrophosphorylase |
|---|
| TIGRFAM ID | [TIGR01334] putative molybdenum utilization protein ModD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCCG CGACCACTGC CGAACTGGAG CGCCTGCTCG ACGACGACGT GCCGTGCGGC
GACCTGACCA CCGAGGCGCT GGGCATCGGC GCCGCGCCCG GCGTGATGCG GTTCGCTGCC
CGCGACCCGA TGGTGCTGGC GCTCGCCGAA GATGCTGCTG CAATCATCCG GCTGTGCGGC
TGCGAGGTTG AACTGGTCGC CTCATCCGGC AGCCGGCTCG CGGCGGGCGC TCCGATCCTG
ACCGCGCGCG GCAGCGCCTC GGGCCTGCTG CGCAGCTGGA AGGTGGCGCA GACGCTGATC
GAGATCTGGT CCGGCGTCGC CACAGCGGCG CGCGACATCG TCGATGCGGC GCGCGCGGTG
TCGCCGACCA TCGCGGTCGC CTGCACCCGT AAAAACACGC CGGGTACCAA ACGGTTTGCG
GTCGCCGCCG TGAAAGCCGG CGGCGCCACC ATGCATCGGC TCGGCCTGTC CGAGACGGTG
CTGGTGTTCG GTGAGCACCG CGGCTTTCTG AATGAGCCGC TGGCGGCGAC GGTGACGCGG
CTGCGCGCCA CGCTCCCCGA AAAGAAGCTG ATCACCGAAG TGGCGTCGAT CGACGCAGCG
CTTGCCGCGG CGGAGGCCGG TTTCGACGTG CTGCAGCTCG AAAAATTCGC GCCCGCCGAT
GTCGCGACCT TGGTCCAGCA ACTTGCCGTG CGGCCGTCGC GCCCGATCGT TGCGGTCGCC
GGCGGCGTCA ACGCCGGCAA CGCCGCTGCT TATGCCGAAG CCGGCGCGGA GGTGCTGGTG
ACCTCGGCGC CGTACATGGC GAAGCCGCGC GACGTGCAGG TGCGGATCAC GCGGGCAAAC
TAA
|
|---|
| Protein sequence | MSAATTAELE RLLDDDVPCG DLTTEALGIG AAPGVMRFAA RDPMVLALAE DAAAIIRLCG
CEVELVASSG SRLAAGAPIL TARGSASGLL RSWKVAQTLI EIWSGVATAA RDIVDAARAV
SPTIAVACTR KNTPGTKRFA VAAVKAGGAT MHRLGLSETV LVFGEHRGFL NEPLAATVTR
LRATLPEKKL ITEVASIDAA LAAAEAGFDV LQLEKFAPAD VATLVQQLAV RPSRPIVAVA
GGVNAGNAAA YAEAGAEVLV TSAPYMAKPR DVQVRITRAN
|
|---|
| |