| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1182 |
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| Symbol | |
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| ID | 6408838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1253332 |
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| End bp | 1255872 |
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| Gene Length | 2541 bp |
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| Protein Length | 846 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711080 |
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| Product | response regulator receiver modulated GAF sensor protein |
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| Protein accession | YP_001990197 |
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| Protein GI | 192289592 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.75997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCGTA AGGTCGATCT CACCTCCTGC GATCGCGAGC CGATCCACAT CCCCGGCAGC
ATTCAGCCGT GCGGCTGCCT GCTGGCCTGC GACGCGCAGG CGGTGCGGAT CACGCGCATT
TCGGAAAATG CCGGCGCGTT CTTTGGACGC GAAACTCCGC GGGTCGGTGA GCTACTCGCC
GATTATTTCG GCGAGACCGA AGCCCATGCG CTGCGAAACG CACTGGCGCA GTCCTCCGAT
CCAAAGCGGC CGGCGCTGAT CTTCGGTTGG CGCGACGGCG TGACCGGCCG CACCTTCGAC
ATCTCGCTGC ATCGCCATGA CGGCACATCG ATCGTCGAAT TCGAACCTGC GGCGGCCGAT
CAGGCCGACA ATCCGCTGCG GCTGACGCGG CAGATCATCG CGCGCACCAA AGAGCTGAAG
TCGCTCGAGG AGATGGCCGC ACGGGTGCCG CGCTATCTCC AGGCGATGCT CGGCTATCAC
CGCGTGATGA TGTACCGCTT CGCGGACGAT GGCTCCGGCA AAGTGATCGG CGAGGCGAAG
CGCAGCGACC TCGAGAGCTT TCTCGGCCAG CACTTTCCGG CGTCGGACAT CCCGCAGCAG
GCGCGGCTGC TGTACTTGAA GAACGCGATC CGCGTGATCT CGGATTCGCG CGGCGACAGC
AGCCGGATCG TGCCGGAGCG CGACGCCTCC GGCGCCGCGC TCGATCTGTC GTTCGCGCAC
CTGCGCAGCG TCTCGCCCAT CCATCTCGAA TATCTGCGGA ACATGGGCGT CAGCGCCTCG
ATGTCGCTGT CGATCATCAT TGACGGCACG CTGTGGGGAT TGATCGCCTG TCATCATTAC
GAGCCGCGTG CCGTGCCGAT GGCGCAGCGC GTCGCCGCCG AAATGTTCGC CGATTTCTTC
TCGCTGCACT TCACCGCCGC CCACCACCAA CGCCGCTTCC AGTCCTCGCT GCGCACCCGG
CGGACACTCG ACAGCCTGAC CAGCGAGATG TCGTTCGACG CCTCGGTCGA CGACTTCCTG
CGCGGCAACC TGAAACGCAT CGCCGACCTG ATCCCGAGCG ACGGCGTCGG GCTGTGGATG
AACGGGGTCT GGACCGCGCA CGGATCGACG CCGCCCGCTG ACGCGCTGCC GTCGATCCTG
CATCTTCTCA CCGGCCGGGC CGGCAACGAG ATCGTCGCCA CCCACGCCCT CACCGACCGG
ATCGCGGCGG CGACCGACTA TGCGGGCGCC GCAGCCGGCA TGCTGGCGAT CCCGCTGTCG
CAGGTCGCCG GCGATTACTT GCTGTTCTTC CGCAAGGAGC AAGTCCAGAC GCTGAATTGG
GCGGGCGATC CGAACAAGAC CTACGACACC GGCCCGCTCG GCGACCGGCT GACGCCACGC
AAGAGCTTCT CGATCTGGAA AGAGCAAGTC GATGGCCAAT CGGTACCGTG GAGCCCCGAC
GATCGCGACA CCGCGGCAAC CATTCAGGTT GGCTTGCGCG AAGTCCTGCT GCGGCAGAGC
GAAATACTCT CGGCTGAGCG CAAGAAGGCG GAGGTGCGAC AGCGCGTCCT CAACGAAGAA
CTCAATCATC GCGTCAAGAA CATCCTGGCG CTGATCAAAT CGCTGGTGAA TCAGCCCGCC
GGCGAAGGCA AATCGCTGGA GGAGTTCGCT TCGGCGCTCC GCGGTCGGAT CATGGCGCTG
TCGTTTGCGC ATGATCAGGT GGTGCGGTCC GACGGCGGCG GCGCGCTGCT CGATCTGATC
CAAGCCGAAC TGTCGCCCTA CCCGGCGAGC CAGATCGCTC TCGAGGGCCC GGATGTCGGC
GTCGATGCCC GCGCCTATTC GGTGCTGGCG CTGGTGCTAC ACGAGCTGGC CACCAATGCG
GCGAAATACG GCGCGTTGTC GCGTTCGTCG GGACGCCTCA AGGTCGCCTG GACGGTGGGT
GACGACGGCC GCTGCGACAT CGAGTGGACC GAGAGCTGCG GCCCGCCGGT CCGGCCACCG
ACTCGGCAGG GCTTCGGCAC GGTGCTGCTC AGCCGCAGCA TTCCGTTCGA TCTCGGCGGA
TGGAGCGAAG TCGACTACCT GCCGGGCGGC GTCGTCGCCC GGCTCGGTAT TCCGGGCCAA
TTCGTCACCG AGACGCTGCA GCGGCTGTCC AGCGTGCAGG CAAGCGGCCA GAGCACCGAC
AGCAGCGCGC TGCTGAACAT CGCCGACGCA TCGATCCTGC TCGTCGAAGA TCAACTGGTG
ATCGCACTGG ACGCCGAGGA TATGCTCGGC GCAATCGGAG CGAAGTTGGT AACCTCGGTC
GCCTCCGCCG AAGAAGCGCT GCAGACAATC GCGCAGCAGC CCCCGACGCT GGCAATTCTC
GACGTCAATC TCGGCAACGG CAGTTCGCTT CCGGTGGCCG ATGAACTCGA ACGCCTCGGC
ATCCCTTTCA TCTTCGCCAC CGGCTACGGC GACACGGCGA TGATCCCCGA GCGCATGCGC
GGCCTGCCGA TCGTCCGTAA GCCGTATTCG ATCGACTCGC TGCGCGGTGC CCTGTCCGCA
ATGCTCGACG ATCGCGAATG A
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| Protein sequence | MPRKVDLTSC DREPIHIPGS IQPCGCLLAC DAQAVRITRI SENAGAFFGR ETPRVGELLA
DYFGETEAHA LRNALAQSSD PKRPALIFGW RDGVTGRTFD ISLHRHDGTS IVEFEPAAAD
QADNPLRLTR QIIARTKELK SLEEMAARVP RYLQAMLGYH RVMMYRFADD GSGKVIGEAK
RSDLESFLGQ HFPASDIPQQ ARLLYLKNAI RVISDSRGDS SRIVPERDAS GAALDLSFAH
LRSVSPIHLE YLRNMGVSAS MSLSIIIDGT LWGLIACHHY EPRAVPMAQR VAAEMFADFF
SLHFTAAHHQ RRFQSSLRTR RTLDSLTSEM SFDASVDDFL RGNLKRIADL IPSDGVGLWM
NGVWTAHGST PPADALPSIL HLLTGRAGNE IVATHALTDR IAAATDYAGA AAGMLAIPLS
QVAGDYLLFF RKEQVQTLNW AGDPNKTYDT GPLGDRLTPR KSFSIWKEQV DGQSVPWSPD
DRDTAATIQV GLREVLLRQS EILSAERKKA EVRQRVLNEE LNHRVKNILA LIKSLVNQPA
GEGKSLEEFA SALRGRIMAL SFAHDQVVRS DGGGALLDLI QAELSPYPAS QIALEGPDVG
VDARAYSVLA LVLHELATNA AKYGALSRSS GRLKVAWTVG DDGRCDIEWT ESCGPPVRPP
TRQGFGTVLL SRSIPFDLGG WSEVDYLPGG VVARLGIPGQ FVTETLQRLS SVQASGQSTD
SSALLNIADA SILLVEDQLV IALDAEDMLG AIGAKLVTSV ASAEEALQTI AQQPPTLAIL
DVNLGNGSSL PVADELERLG IPFIFATGYG DTAMIPERMR GLPIVRKPYS IDSLRGALSA
MLDDRE
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