| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1169 |
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| Symbol | |
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| ID | 6408825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1237065 |
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| End bp | 1238207 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642711067 |
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| Product | hydrogenase expression/formation protein HypD |
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| Protein accession | YP_001990184 |
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| Protein GI | 192289579 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.783843 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATACG TGGACGAATA TCGCGACGGC AAGGTGGCGC GGCAGATCGC GGCGGCGATC
GCACAGGCGG CCGATCCATC GCGCAGCTAT CACTTCATGG AGTTCTGCGG CGGCCACACC
CACGCGATCT CGCGCTACGG CCTGGAAGAC CTGTTGCCGC CGAACGTCCG AATGGTGCAC
GGCCCCGGCT GTCCGGTCTG CGTACTGCCG GTCGGTCGGA TCGACATGGC GATCCAGCTC
GCGCAGCGTC CGGAGGTGAC GCTGTGCACC TATGGCGACC TGATGCGGGT GCCCGGCTCG
CACGGCACCT CGCTGCTGCG CGCCAAGGCG GCCGGCGCCG ACATCCGCAT GGTGTATTCG
ACGCTGGATG CGATCGCGAT CGCCGAGGCG GAGCCGAACC GCGAGGTGGT GTTCTTCGCC
ATCGGTTTCG AAACCACGAC GCCGCCGACC GCATTGGCGA TCAAGCTCGC GGCCGCCAAG
CGGCTCACCA ATTTCAGCGT GTTCTGCAAC CACGTGCTGA CGCCGCCGGC GATCCGCGGC
ATCCTCGAGC ATCCCGATCT CGATGGTCAG CCGGGGCCGC GCCTCGACGG CTTCATCGGT
CCCGCGCATG TCAGCGCAGT GATCGGCGCC GATGCATTCG CCGAGTTCGC GCGCGATTTT
GCCAAGCCGG TGGTGGTCGC CGGCTTCGAA CCGCTCGATG TGATGCAGTC GATCCTGATG
CTGGTGCAGC AGGTCAATGA CGGCCGCCAC GTCGTCGAGA ACCAGTACAT CCGCGCGGTG
ACGCCGGGGG GCAACCGCAT CGCGCAGGCT GAAGTCACGG CGATCTTCGA GCTGCGGGAC
AGCTTCGAAT GGCGCGGCTT CGGCCGCGTG CCGGCGAGCG GACTGCGGCT GCGCGAGGCT
TATGCGGCCT TCGACGCCGA GCGCCGCTTC GCGATGGCGG AGATCTCCGC CGCCGACAAT
CCGGCGTGCG ACTGCGGCGC GATCCTGCGC GGCATCAAGC GTCCGACCGA TTGCAAATTG
TTCGGCACGC TGTGCACGCC GGAGACGCCG ATGGGATCGT GCATGGTGTC TTCGGAAGGC
GCTTGCGCAG CGCATTGGAC CTACGGTCGC TTTCGCGACC ACGCAAGGAG GGCGGTGGCA
TGA
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| Protein sequence | MKYVDEYRDG KVARQIAAAI AQAADPSRSY HFMEFCGGHT HAISRYGLED LLPPNVRMVH
GPGCPVCVLP VGRIDMAIQL AQRPEVTLCT YGDLMRVPGS HGTSLLRAKA AGADIRMVYS
TLDAIAIAEA EPNREVVFFA IGFETTTPPT ALAIKLAAAK RLTNFSVFCN HVLTPPAIRG
ILEHPDLDGQ PGPRLDGFIG PAHVSAVIGA DAFAEFARDF AKPVVVAGFE PLDVMQSILM
LVQQVNDGRH VVENQYIRAV TPGGNRIAQA EVTAIFELRD SFEWRGFGRV PASGLRLREA
YAAFDAERRF AMAEISAADN PACDCGAILR GIKRPTDCKL FGTLCTPETP MGSCMVSSEG
ACAAHWTYGR FRDHARRAVA
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