Gene Rpal_1166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1166 
Symbol 
ID6408822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp1233601 
End bp1234557 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content63% 
IMG OID642711064 
Producthydrogenase accessory protein HypB 
Protein accessionYP_001990181 
Protein GI192289576 
COG category[K] Transcription
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 
TIGRFAM ID[TIGR00073] hydrogenase accessory protein HypB 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.153393 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGTACGG TTTGCGGATG CGGCGATGCC AGTGCGGATC CGGGTCATGG TCACGACCAT 
CCGCACAGCC ATGGCCATTC TCACGGCGAC GGTCACGCTC ATCATCACCA CCATCACCAC 
GATCATGATC ACGCGCATCC GCACACGCAT GATCACGACC ACGGCCATGA TCATCACCAC 
GATCACGGGC ACGACCATGG CCATGTGCAT GCACCGGCGG GCGGCAGCAT CGATTTTGGT 
GCCGGCCTCG CCGGCGTGCA CATCCCCGGT CTGTCGCAGC CGCGGATCGT GCAGATCGAG 
CGCGATATTC TGTCCAAGAA CGACGCTTAC GCGGCGGAAA ACCGCGCCCG GTTGGCGGCG 
AGCGGCACTT TCGCGCTCAA CTTCGTCTCC AGCCCGGGCT CGGGCAAGAC GTCGCTGCTG 
GTGAAAACGA TCTCAGACCT GAAGGATCAG TATCCGATCG CGGTGGTCGA AGGCGATCAG 
CAGACCGCCA ACGATGCCGA GCGAATCCGC GCCACCGGCG CGCCGGCGAT CCAGATCAAC 
ACCGGCAAGG GCTGCCATCT CGACGCCCAC ATGGTCGGCC ACGCGCTCGA TCAATTGCCG 
CGCCATGAGG GCGGACTGCT GTTCATCGAG AACGTCGGCA ACCTGGTCTG TCCCGCCGGT 
TTTGATCTCG GTGAGGCGCA CAAGGTGGTG GTGCTGTCGA TCACCGAAGG CGAAGACAAG 
CCGCTGAAAT ATCCGCACAT GTTCGCGGCC GCGAAGCTGC TGCTGCTGAA CAAGATCGAC 
CTGCTGCCGC ATCTCGACTT CGATCTTGCC GCGACGATCG AATATGCGCG GCGTGTCAAC 
CCGACCATCG AAGTGCTGAC GGTGTCGGCC AAGACCGGCG AAGGTTTGGC GGCTTTCTAC 
GCCTGGATCG GCAAGCGTGC GGTCGCGGTG CGGGCCGCCG CCAACGCAGC CGAGTAG
 
Protein sequence
MCTVCGCGDA SADPGHGHDH PHSHGHSHGD GHAHHHHHHH DHDHAHPHTH DHDHGHDHHH 
DHGHDHGHVH APAGGSIDFG AGLAGVHIPG LSQPRIVQIE RDILSKNDAY AAENRARLAA 
SGTFALNFVS SPGSGKTSLL VKTISDLKDQ YPIAVVEGDQ QTANDAERIR ATGAPAIQIN 
TGKGCHLDAH MVGHALDQLP RHEGGLLFIE NVGNLVCPAG FDLGEAHKVV VLSITEGEDK 
PLKYPHMFAA AKLLLLNKID LLPHLDFDLA ATIEYARRVN PTIEVLTVSA KTGEGLAAFY 
AWIGKRAVAV RAAANAAE