Gene Rpal_1123 details

Gene Information

• Locus tag: Rpal_1123
• ID: 6408779
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 1188010
• End bp: 1191543
• Gene Length: 3534 bp
• Protein Length: 1177 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642711024
• Product: hypothetical protein
• Protein accession: YP_001990141
• Protein GI: 192289536

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.928627
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGGCG AGATCGCATC GCTGTTCGCA AGCGACATCA CTCGGCAGAT CGAGGAGGTC 
ATCAAGGTCG ACCAGACCTC GGCCGACATC ATCGCATCCG AAATCGACGA ATACGTCGTC 
ACCGACGCGA TCAAGAAGCA CTATGTGCAC GTCCTGGAGC GATACCAGGA GACCCGTCTC 
AAGCCTCACG AAGGCGGGGC GATCTGGATC TCCGGCTTCT TCGGTTCCGG TAAATCGAGC 
TTCGCCAAGG TGCTGGGCCT CGCGATCGAA GATCGCGACA TCCTCGGAAC GTCCGCTGCG 
AACAGGTTCG CCGCGCGCGC CGGCGACCCG AAGCTCGCCG TGGTCCTCAA GACCATCAAC 
GAGCAGATCC CGACGCACAC CGTCATCTTC GACGTCTCGA CCGACAGAGG CATCCGGTCC 
GGCAATCAGA TGCTGACCGA GATCATGTAT CGCCTGTTCC TGAGTAGCCT CGGCTACGCC 
AAGGAGATCG ATCCGGCGGA ACTGGAGATC GCGCTCGAAG GAGAGGGGCG CCTCGATAAG 
TTCAAGGAGG TGTTCCAGGA GCTTAACGGG AAATCCTGGG ATACCCAGAA GAACCTGCCG 
ATCTTCGCCC TCAACCAGGC GAGCGCCGTG CTGCACAAGC TCGAGCCGGC CACCTATCCG 
ATGGCGGATT CGTGGTCGAA AGGCCGACCG AAGATCGACA TTACCCCGGG GCGTCTGGCC 
GACCGTATCG TGGAGTTGAT GAACCGCCGC AAGCCTGGGC AGGCGCTCAT CTTCGTCGTC 
GACGAAGTCG GTCAGTTCGT GGCCAGAGAT ACCCAGAAGA TGCTCGACCT GCAGGCCATC 
GTGCAGCAGC TCGGCGTCAA GGGCCGCGGC AAGTATTGGA TCGCGGTCAC CTCGCAGGAA 
CGCCTGAGCG AAGTCGTCAG CGGTCTCGAC AACCACCGGA TCGAGCTTCC GAAACTGATG 
GACCGCTTTC CCCTCCAGGT GCACCTGGAG CCGTCGGACA TCTCGGAAGT CACCAGCCGG 
CGCGTGCTCG CGAAGAACGC GGTGGCCGAG ACGGTGCTCG GCAAGCTCTA CGACGACAAC 
CGCGCCCGCC TGGATCTCAA TTCCAAGATC ACCGCCGACG TCTCGCTGCC GACCCTGTCG 
CGCGAGCGGT TCGTCGATCT CTATCCGCTT CTGCCCTATC AGATCGACCT GATCATCGAC 
GTCGTCTCCG GCCTGCGCAT GCAGGGCGGC GCGAGCAAGC ACGTCGGCGG CGCCAACCGG 
ACCATCATCA AGCTCGCGCA GCAGCTTCTG ATCAATCCCG CGACCAAGAT CGCCGAGGCC 
CCGATCGGAG CGCTGGTGCG CCTCGATCAG GTCTACGATC TGGTCGAAGG CAACATCAAT 
TCCGACATCC GCGCCAAGAT CATCTCCATT CCCGGCAAGG TCGAGCACCC GCTGGCTCAG 
GCCGTGGCGA AGGTCGTCTG CCTGCTGCAG TTCGTCCGGA CCGTCCATCG AACGCCGGAA 
AACATCGCGG CCGCGCTGGT CGACCGCGTC GACGCCGATT CCAGGTTGAC CGAAGTCCAC 
GAGGCCTTGG CCAAGCTAGA AAGCGCCCAC ATGGTCCGCC AGGGCGACGG CGGATACCGG 
ATCCCGACCC CGGCCGAAGA CGACTGGGAT CAGGCGCGGG CCTCGATCGA CCCCAAGCGC 
GCCGATGAAC GCCGCCTCTA CGCGTCGGTG CTGACCGGCT TCTGGGCGCC GCAGCCCGGC 
TTCACGCTGG GCGACGCCAA GACCTTCAAG GCCGGCCTCA TGGTCGGCGG CAACGAGGAG 
ATGAGCGGCG ACGTCTCCTT CCATCTCGAT CTCGCGGAAA ACGCGGAGCA GGCGGCCGTA 
GAGGCGGAGA ACCTGCGGCG ACGCAGCCAG ATGGACCAGA AGGACGTGTT CTGGAGCGTG 
GCGCTCGATC AGGACATCAG GCGCGAGATG CGCGAAGCCT TCCGTTCCGA CGAGATGATC 
AAGCGCAAGG GGCGGGGGGC CCCGACTGCA GACGAGACCG CGCTCATCGC CGAGGAGAAG 
GTCCGGCAGC GCAATCACAT GCAGGAGCTC GGCCGTCGTC TAAAGGCTGC GTGCCTGTCC 
GGCAAGGTGT TCTTCCGCGG CAACGACCGC AGCCCCGCCG GCACGGCAAC CGAAGTCGGG 
AAGGCCGTGA CGGGCGTGCT CGAACAGGTG CTCCCCGACG TCTACAACCG CTTCGCGGAG 
GCCTCGGCCA AGAAGGCCGA GGTCACGAAG GGCGTCGACG CCCTTCTCAC CGCCGAGAAC 
CTCGCGGGTC TGCCGGCGGT ATTCTCGCAT CTGGAGCTGA TGCGCGACGA ACAGAACAAG 
CGCGTCTTCC GGACCGACGT CGTGCCGTTG TCCGAGATTC TCACCAAGAT CGAAGAGCGG 
GCGGCCTACG GCGAGCAGGT CACCGGCAAA TACCTGGAGG ACGAATTCCT GAAGCCGCCC 
TTCGGCTGGG ATTTCGACGT CATGCGGCTT TTGACGCTGT CGCTGCTGCG TGCGGGCAAG 
ATCGAGGCGA CGTCCAAGGG GCAAGTGATC GACCAGGCGA CGACCACGGC CGCCAAGGAT 
TGCTTCTCCG GCAACAACAC GTTCCGGGCG GCGAGCTTCC GGCCGAAGAA GGGCATCGAT 
TTCGCCGTGC TGGCCCAAGC TTCCGAGAAC TACCGGGACA CGTTCGGCGA CGAGGTGAAG 
GAGCTCGCCG CCGGCCCCAT CGCAGCCGAA ATCCGGGCGG CGGTGGAACG GCAAGAAGAA 
GGACTGGACG CCGTGCTCGG TACGATGCGG TCGGCCCAGC TTCCGGGCAT CGACGTGCTC 
GACGGTGCCG TGAACCAGAT GCGGGCCATC CGCCGCAGCA ACGAAGAGAA CGCCATCCTG 
ACTTTCAACG CCTCCCACAA GAGCCTGAAG GATGCGATCA AGCGCGGTTC GGACCTGGCC 
GGCGCCCTCA ACGAGTCCGC ATTGAAGGCG ATCGCCGACG CCCGAGAGGC TGCGAAGCTC 
GTTCCGGTCC TTGAAGAGGA GCCGGACCTC GATGCCGCCT TTCCCGAGCA AGCCAAGGTC 
CTGAGCGACC TGTTGAGCAA GGAAACCTTC TATCGCGAGA TCGGACCCAT TTCGAAAGCG 
GCGACCTCGA TCAAGACCGA GTACAAACGG CGCTACGAGG AGGCACTCGA CGCCCGCGTG 
AAGGCCTATC TCGACGCCCT CGAAGTGCTG ACCAAGACGC CGGGTTGGGA ACGTCTCGAC 
GAGGCGCAGC GCGACGAACT CTCTGGTCAC CTCCGGAAGT GCGCCGACAA GAACTGGAAC 
AACCAGACCA TCCGCCACCT CAGATCGGAA GCGGAATTGG CGGAGAGCCG CCTGGCCGCC 
GCAATCGCCA AGATGCATCA GATTCTTGAC GGCGAACGCC TCGCGACCGT GTCGGTCGGT 
CAGTTCTTCT CCGGCGGCAT CGAGACCGAG GAGCAGCTGG ACCAGGCACT GGGCGGCATC 
AGGGACGAGT TTGCGCGCCT CATCGGCGAA GGCAAGAAGG TGATCGTCAG GTGA 

 

Protein sequence

MAGEIASLFA SDITRQIEEV IKVDQTSADI IASEIDEYVV TDAIKKHYVH VLERYQETRL 
KPHEGGAIWI SGFFGSGKSS FAKVLGLAIE DRDILGTSAA NRFAARAGDP KLAVVLKTIN 
EQIPTHTVIF DVSTDRGIRS GNQMLTEIMY RLFLSSLGYA KEIDPAELEI ALEGEGRLDK 
FKEVFQELNG KSWDTQKNLP IFALNQASAV LHKLEPATYP MADSWSKGRP KIDITPGRLA 
DRIVELMNRR KPGQALIFVV DEVGQFVARD TQKMLDLQAI VQQLGVKGRG KYWIAVTSQE 
RLSEVVSGLD NHRIELPKLM DRFPLQVHLE PSDISEVTSR RVLAKNAVAE TVLGKLYDDN 
RARLDLNSKI TADVSLPTLS RERFVDLYPL LPYQIDLIID VVSGLRMQGG ASKHVGGANR 
TIIKLAQQLL INPATKIAEA PIGALVRLDQ VYDLVEGNIN SDIRAKIISI PGKVEHPLAQ 
AVAKVVCLLQ FVRTVHRTPE NIAAALVDRV DADSRLTEVH EALAKLESAH MVRQGDGGYR 
IPTPAEDDWD QARASIDPKR ADERRLYASV LTGFWAPQPG FTLGDAKTFK AGLMVGGNEE 
MSGDVSFHLD LAENAEQAAV EAENLRRRSQ MDQKDVFWSV ALDQDIRREM REAFRSDEMI 
KRKGRGAPTA DETALIAEEK VRQRNHMQEL GRRLKAACLS GKVFFRGNDR SPAGTATEVG 
KAVTGVLEQV LPDVYNRFAE ASAKKAEVTK GVDALLTAEN LAGLPAVFSH LELMRDEQNK 
RVFRTDVVPL SEILTKIEER AAYGEQVTGK YLEDEFLKPP FGWDFDVMRL LTLSLLRAGK 
IEATSKGQVI DQATTTAAKD CFSGNNTFRA ASFRPKKGID FAVLAQASEN YRDTFGDEVK 
ELAAGPIAAE IRAAVERQEE GLDAVLGTMR SAQLPGIDVL DGAVNQMRAI RRSNEENAIL 
TFNASHKSLK DAIKRGSDLA GALNESALKA IADAREAAKL VPVLEEEPDL DAAFPEQAKV 
LSDLLSKETF YREIGPISKA ATSIKTEYKR RYEEALDARV KAYLDALEVL TKTPGWERLD 
EAQRDELSGH LRKCADKNWN NQTIRHLRSE AELAESRLAA AIAKMHQILD GERLATVSVG 
QFFSGGIETE EQLDQALGGI RDEFARLIGE GKKVIVR