| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1085 |
|---|
| Symbol | |
|---|
| ID | 6408741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1150461 |
|---|
| End bp | 1152569 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642710991 |
|---|
| Product | Oxidoreductase FAD-binding domain protein |
|---|
| Protein accession | YP_001990108 |
|---|
| Protein GI | 192289503 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGAT CCGCTACGCC CTTCCGGTGC CGACACGATC TGCTCTCCCG GCTCTTCTGT
GGGTCGTTGG TCGCGAGCAT CACAGTCGCG GTCACTGTGG CGTTTGCCAA TGACGGTCGC
GTACAGCAAG GTCAAGATGA GTTCGCGGCG TTGCCGACAC GCGTGAGGGT GCCCGATGTT
GCTTCAGGTC GGTCGAGCGG CCGGCCGGGC GCCGAGCAGC CGAATCGAAT CTGGCGTCTG
GCGCAGGACG ATAGTCATTC GGCTCACCAT CCCGCCGCCC CTAGCAGCGA TACGGTGCCG
CAATCGAATG GCCCGACAAT GTCGGGTGGC AACACCGCGG CTCCATCGTC AAGTCGTCCC
AATTCGGGGA TGATGGGCGA GATGGAGATG ATGGGGCGGC CCCGCAAGGA GTTCTTTCCG
TCGCTGATGG AGATGCCGGC CCTCTCGGCG GAGCAGCGCC GCAATTTGGA ATCTCAAGCT
CGCAGCCGAA TCAACTCCAA AATTGACGGA ATCTCAACGG CCGAGATGGA CTTGCGGCAT
GCCATTGCTG CCGGCGATGT GGCGGCGGCG GATGGGGCTG CCGCTCGAAT TCGCGACTCG
CTCAACCAGG TCCAGAGTGG TGTGACCGTG TTGCGGTCGC TGGACGAGGG GGCGTCCCCG
CAGCAGATAG CGCGGACCTG GTTCAAGGCG CAGATGAATC TTCCGGTGCA AACCGCGGCG
GTGAGTGCTG ATGGTGTACT TGGAGTTTCC TGGTTTCACG TCATCACGAT GGGACTGCTT
GCGATCTTCT CGGCCGGACT GCTGGCCGTC CATGTGGCGC GAATGCGACG GGCCAACGCG
CTGGTTGACC GATTATCACA TGTCCCGGGC AATTCCCCGG CATTGTCTAC CGCAGGCGTC
GATATTCGAT CGACAACCAG GATGGTCGAT GTCCCGGCCG TGCCCGCGAC GAGAAATGCG
TCTCGAGGGC AGGAAAAGGA GGCGCCAGCC GCGTCGCAGG CGAGTGCTCC GAGCGCTCGT
CCAGCAAAGC CGGAGGGACT CTGGAAAGGT AAGCTTCGCG TCGGAGCAAT CTTCGACGAA
ACGCCGAGCG TCAAGACGTT TCGTCTGCAA GCGCCGCAGG GCGGCCCTAT TCCCTTCGCG
TTTCTCCCGG GTCAGTTCTT GACCTACTCG GCCGAGATTG ATGGAAAGGT CGTCAGACGA
TCTTACACTA TCGCTTCGTC CGCCGCCCAG ACCGCCTACG TGGAGACCAC GATCAAGAAA
GAAGACGGGG GCATTTTCTC CGCGTACCTG CACGCCAGCA TTAAGGAAGG CGATCTCCTT
GATGTCATGG CTCCTTCCGG CGCCTTCACT TTCACCGGCA AGGAGGCCGA GAGCGTGGTC
TTGATCGGTG GGGGCGTAGG TATCACGCCC TTGATGGCGG CGATACGATA TCTGTTCGAT
ACCGCGTGGC CCGGACAGAT CTACCTCGTC TACGGCTCCC AGACGACTGA ACAGTTCATT
TTCAGAGACG AACTGGAACA CCTTCAGCGT AGAATGAACA ACCTGCATGT AGCCGCCACT
ATGGCGCGCG CAGCGGGTAC GGCCTGGATG GGAAGCGAAG GCCAAATCAC GGCCGAATTC
TTGCAACGCT CGGTACCCGA ACTTGCAAAG CGTCGCGTGC ACTTGTGTGG GCCTCCGGGG
ATGATGGAAG CGCTCAAGAG GACGCTCCGC GAAATTGGCG TCCCCCCCGA ACAGGTCAAA
ACCGAGGCAT TCGGACCCGC CTTCGGAGCC GTTCCGCCTC CAGGCAGGAC CATTATCGAA
AGTCCCGTGC CGAAAAACGC CGAAGGGGGT GCAGTGATCG GTCCGGCAAC GGCATCGATC
CGCTTCGCGA AGTCGGGCAA GCTCGCTCCG CTGCCCCCCG ACAGAAGCGT TCTCGAGGTC
GCCGAGTCGA TCGGCGTGGC GATCGACTAT TCGTGCCGTG CCGGAACATG CGGCATCTGC
AAGACGCGGC TTCTCGAAGG CAAGGTCACG ATGGAAGTCC AGGATGCGCT AACGGAGGAG
GAAAAAGCCG ACGGACTGAT CCTCGCGTGC CAGGCGAAGT CGATCGGAAA TTTGATCGTC
GAGGCTTGA
|
|---|
| Protein sequence | MSRSATPFRC RHDLLSRLFC GSLVASITVA VTVAFANDGR VQQGQDEFAA LPTRVRVPDV
ASGRSSGRPG AEQPNRIWRL AQDDSHSAHH PAAPSSDTVP QSNGPTMSGG NTAAPSSSRP
NSGMMGEMEM MGRPRKEFFP SLMEMPALSA EQRRNLESQA RSRINSKIDG ISTAEMDLRH
AIAAGDVAAA DGAAARIRDS LNQVQSGVTV LRSLDEGASP QQIARTWFKA QMNLPVQTAA
VSADGVLGVS WFHVITMGLL AIFSAGLLAV HVARMRRANA LVDRLSHVPG NSPALSTAGV
DIRSTTRMVD VPAVPATRNA SRGQEKEAPA ASQASAPSAR PAKPEGLWKG KLRVGAIFDE
TPSVKTFRLQ APQGGPIPFA FLPGQFLTYS AEIDGKVVRR SYTIASSAAQ TAYVETTIKK
EDGGIFSAYL HASIKEGDLL DVMAPSGAFT FTGKEAESVV LIGGGVGITP LMAAIRYLFD
TAWPGQIYLV YGSQTTEQFI FRDELEHLQR RMNNLHVAAT MARAAGTAWM GSEGQITAEF
LQRSVPELAK RRVHLCGPPG MMEALKRTLR EIGVPPEQVK TEAFGPAFGA VPPPGRTIIE
SPVPKNAEGG AVIGPATASI RFAKSGKLAP LPPDRSVLEV AESIGVAIDY SCRAGTCGIC
KTRLLEGKVT MEVQDALTEE EKADGLILAC QAKSIGNLIV EA
|
|---|
| |