| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1064 |
|---|
| Symbol | |
|---|
| ID | 6408720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1130069 |
|---|
| End bp | 1131289 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642710975 |
|---|
| Product | putative membrane protein of unknown function |
|---|
| Protein accession | YP_001990092 |
|---|
| Protein GI | 192289487 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4645] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACTGT TTGGTCCGCC TCCCGCTCGC GATCTGAGGC TCGATCTGTT TCGGGGATTG
GCGAACTGGG CCATCTTCTT CGGTCACATT CCCGGAACGG CGCTCGCGTG GTTGACCTCG
CGAAATTACG GTTTCAGCGA CGGGGCTGAT TTGTTCGTCT TCATTTCCGG TTACACCACC
GCACTGGTGT TCGGCCGGAT GATGGCGCAA CGCGGCTTCC TGATTGGCGC AACCCGCCTG
CTCAAACGCG TCTGGCAACT CTACGTCGCA TACGTCCTTC TCTTTATCTT CTATCTGACC
TCGGTTCACT ATTTGGCCCA TCGTTTTGAC ATCGGCCACT TGATGGACCA GTTCAACGTT
GCACGTCTGA TGGAATTCCC GGTCGAGACA TTGGCCGAAG GGCTGATGCT GAAGTTCAAG
CCGCTCAATC TCGACGTGCT TCCTCTCTAC ATCGTCTTGA TGGCAGCGTT TGTGCCGATC
CTGTGGCTGA TGTTGCGGCA CCGAAACTGG GCGCTTGCCG GATCGCTGCT GCTGTACCTT
GCCGCGAGAG CCTTTCATTG GAATCTCCCC TCATATCCGT CCGGGGGGTG GTTTTTCAAT
CCATTCACCT GGCAGCTGCT GTTCGTGCTG GGCGCATGGT TCGCCGCAGG AGGCGCCCGA
GACGTCCGCG CCATCGTCAC AGCTCGGACG GCCTTGGTCG TCAGCGTCGG CTTTGTGCTG
TTTGCTTTGG TGGCAACGCT CGCCACGCTG ATCCCTGCGA TGGACGTCCC GATCGTGAGC
CAGTTGACCC AGGCCTTTCG TCCCAACGAT AAGACCAATC TTGCTCCTTA TCGCGTCCTC
CACCTCATGG CGTTGGCGCT GCTGGCGGTG AGGTTCATTC CAATCGATTG GCCGGGACTT
CGCTGGCCGA TCTTTCGTCC CCTTATCACT TGCGGCCAGC AATCTCTCGA GGTCTTCTGC
GTCGGGGTCT TTCTGGCATT TATCGCGCAC TTCGTCTTGG AAACCACGTC ACAATCCTTC
TTCGCTCAGC TTCTGGTGGG GGCCGCCGGT CTGTCGGTTA TGACGGGCGT CGCCTACTAC
CGTTCCTGGT CAAAACAAAT TGACAAGGCG CCAATTACCA CGGCGAAACG GCCTCCGGCG
ACGCAAAGCT CGCAGCTCCC TCCCCAAGAG GTCGCGGCTG ACCAGACGAC GTCAAACGAA
ATGCGCGGGA ATGCGAGCTG A
|
|---|
| Protein sequence | MPLFGPPPAR DLRLDLFRGL ANWAIFFGHI PGTALAWLTS RNYGFSDGAD LFVFISGYTT
ALVFGRMMAQ RGFLIGATRL LKRVWQLYVA YVLLFIFYLT SVHYLAHRFD IGHLMDQFNV
ARLMEFPVET LAEGLMLKFK PLNLDVLPLY IVLMAAFVPI LWLMLRHRNW ALAGSLLLYL
AARAFHWNLP SYPSGGWFFN PFTWQLLFVL GAWFAAGGAR DVRAIVTART ALVVSVGFVL
FALVATLATL IPAMDVPIVS QLTQAFRPND KTNLAPYRVL HLMALALLAV RFIPIDWPGL
RWPIFRPLIT CGQQSLEVFC VGVFLAFIAH FVLETTSQSF FAQLLVGAAG LSVMTGVAYY
RSWSKQIDKA PITTAKRPPA TQSSQLPPQE VAADQTTSNE MRGNAS
|
|---|
| |