| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1045 |
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| Symbol | |
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| ID | 6408701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1112164 |
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| End bp | 1115313 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642710958 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_001990075 |
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| Protein GI | 192289470 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGGCC GGCTGATCGA GTTCAGCGCG CGGAACGCGC TTCTCATGCT TCTCCTTATC
GTGGCCATCA TCGGCGGAGG CGTTTGGGCG GTCTACAACA CGCCCTTGGA TGCACTTCCG
GACCTCTCGG ATGTGCAGGT CATCGTCGCC ACTGATTGGG AAGATCGCAG TCCCAACATC
ATCGAAGACC AAATCACCTA TCCCATCGTG ACGCAGTTGC TCTCCGCCTC AAAGGTCAAG
GCGGTGCGAG CCACCAGTTT TTACGGCCAG TCTCTGGTCT ATGTCATCTT CGAAGACGGT
ACTGACCTGT ACTGGGCGCG CAGCCGGGTC TTGGAGTATC TTAGCGGCAT GGCCGGCAAG
CTGCCGGCGG GCGTTTCTCC GCAGTTGGGG CCGGACGCAA CCGGCGTGGG TTGGGGGCTC
GAATACGTTC TGATTGACAA GACCGGAAAA CACTCGCTGT CCGAGCTTCG CAGTCTGCAG
CAATGGCAAG TGCAGTATCA GATCCGCGCC GTTCCAGGCG TTGCGGAAGT CGCCAGCGTC
GGCGGCTTCG TGAAACAATA TCAGGTCACC GTCGACCCGG ACAAGCTGCT GGCCTACAAA
ATTCCGATCA ACAAGGTGGT GGAGCAGGTT CGCCGAGGCA ATCAGGAAGT CGGCGGCAGG
GTATTGGAGT TCACCGGCAC CGAGTACATG GTGCGAGGTC GGGGCTATTT CCAATCGCCG
TCCGACATTG AAAAGGTGGC AGTCGGAGCA CAGTCCGATG GGACGCCTGT TCTGGTCCGC
GACGTCGGCT TCGTCCAGAT CGGTCCGGAC ATCCGCCGTG GCGTGGTCGA CTACAACGGG
TTGGGCGACG CTGCTGGCGG CATCGTGGTC GTCCGGTTTG GCGAAAGTGT CTACGACGTG
TTGGCTTCCG TGAAGCAGAC GATCAAGGAC ACGGTGCAAC CAGGCTTGCC GGAGGGCGTC
GAACTCAATC TCACATATGA CCGGTCCACC CTTATCAATC ATTCGGTCCA GACGCTGAGA
GAGAAGCTTA TCGAAGAAGG AGTGATCGTA AGCCTGGTTT GTCTGGTATT CCTGTTCCAT
TTTCGCAGCG CCTTGGTCGC AATCATCACG CTGCCATTGG CAGTCCTGCT GGCGATGATC
GCGATGCGAT GGATCGGGCT GACCAGCAAC ATCATGAGTC TGGGTGGCAT CGCGATTGCG
GTCGGGGCGA TGGTCGATGC GGCCATCGTG ATGATCGAGA ACGCTCACAA ACATATCGAA
AGAGAGGAGG CCAAGCCCGC TGAGCAGCGC CGGCCGCGGC TGGAACTCGT GATCGTGGCC
TGTCGAGAGG TGGGGCCGTC GCTGTTCTTC TCGCTGCTCA TTATCACCGT CAGCTTTCTG
CCGGTGTTTG CCCTTCAGGA CCAGGAAGGT CGGTTGTTCA GGCCGCTCGC CTACACCAAA
TCCTTTAGCA TGTTGTTTGC GGCGGTGCTG TCCGTCACCG TCACCCCGTT CTTGATGGTA
TGGCTCGTCC GCGGCAAGAT TCCTGCCGAG GAGAACAATC CAATCAACCG CTTCCTGATT
TGGATTTATC AGCCTGTTGC CATGCTGGCG TTGCGGCTGC GCTACGTCAT GGTCGGCGTC
GCCGTTTTCG CCACCGTCGC CATCATCCCC ATCTACAGAA GCCTGGGTAG CGAGTTCATG
CCGCCGTTAT GGGAAGAATC GGTGCTGTTC ATGCCCGCGA CCCTGCCGGC GGCGTCGATA
CAGACGATGA GGCAGGCGAT CCAGGAGCAG GACGCCATTC TGCTCGGCTT CCCGGAAGTT
GCGAGCGTGT TCGCCAAAGC GGGACGCGCC GAAAGCGCGA CCGACCCGGC TCCGCTGGAA
ATGGTCGAGA CGGTCATCAA CCTCAAGCCG CCGGAGCAGT GGCGGAACGG CATCACCCCG
GACAAGCTGA TCGCAGAGAT GAACGCGGCG CTGAACGCGA AGATGAAAGG CTTCTCAAAC
AGCTGGACAA TGCCGATCAA GGCTCGCATC GACATGCTTT CCACCGGAAT CCGCACGCCG
CTCGGCGTCA AGGTGTTCGG ACCGGACCTT GCGGAAATCG GAAGGATTCT GTCGAACGTG
GAGGCCGCGG TCGGCACCAT TCCGGGCACA AGAAGCGTGT TTGCCGAACG TGTGGCGCAG
GGCCATTACC TGGACTTCGA TATCGATCGC GATGCGATCG CCCGTTACGG GCTCTCAGTC
ATGGACGTGC AGGAAGTTAT CCAGGCGGCG GTGGGCGGCG CCAATCTGAC GCAGACCATC
GAGGGCCGCG AGCGCTATCC GGTCAACGTC CGCTACGGAC GTGACCTCCG AGATGACGTC
GGCAAATTGC AGCGGATACT GGTCGCCACC CCTCTGGGAG CGCAAGTGCC CTTGCAGGAA
CTGGCAAAGC TGCGATTCGT CGATGGCCCC GGTCTGATCA AGAGCGAAGC TGCGCAGCTT
GTGGGGTATG CCTACATCGA CATCGCAGAC CGAGACACCG GCAGCTACAT GAACGACGCC
CGCAAGATTG TCGGCGAAAT GGTGAAGCTG CCTCCGGGTT ACCGATTGGA ATGGAGCGGA
TCGTTCGAGG GAATGCAACG GGCGAGCCAG CGACTTCTGT ACGTCATCCC GATCACACTC
GCCGTCATCT TCTTGTTGCT CTACCTGAAC GCGCGATCGA TTGCCAAAGC GCTGATCGTG
ATGATTGCGG TGCCGTTTTC CCTGGTGGGC GCATTCTTCC TGCTTTGGCT GTTGGGCTAT
CACCTTAGCG TTGCCGTATG GGTTGGGATC ATCGCGCTGG CCGGGGTCGA CGCCGAGACC
GGGATGGTGA TGCTGCTGTA TCTGGACGTC GTCTACGAGC GCTGGAAGGA GGAAGGTCGG
ATGCGAAGCA TCCACGACCT CGAAAGTGCC GTGATGGAGG GAGCCGTGCA ACGCGTCCGG
CCAAAGATGA TGACCGTGCT GGCGATATTA ATGGGACTCT TGCCTATCAT GTGGTCCAGC
GGAGCGGGCT CCGATGTCAT GAAGCGAATC GCCGCTCCGA TGGTCGGCGG CGTCGTTACC
AGTTTTCTCT TAACGCTGCT GATCTATCCG GCCATATACG TCATTTGGAA ATGGTGGAGC
GAGGTGCGAT ACCGTCAAGC GGCCAATTGA
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| Protein sequence | MIGRLIEFSA RNALLMLLLI VAIIGGGVWA VYNTPLDALP DLSDVQVIVA TDWEDRSPNI
IEDQITYPIV TQLLSASKVK AVRATSFYGQ SLVYVIFEDG TDLYWARSRV LEYLSGMAGK
LPAGVSPQLG PDATGVGWGL EYVLIDKTGK HSLSELRSLQ QWQVQYQIRA VPGVAEVASV
GGFVKQYQVT VDPDKLLAYK IPINKVVEQV RRGNQEVGGR VLEFTGTEYM VRGRGYFQSP
SDIEKVAVGA QSDGTPVLVR DVGFVQIGPD IRRGVVDYNG LGDAAGGIVV VRFGESVYDV
LASVKQTIKD TVQPGLPEGV ELNLTYDRST LINHSVQTLR EKLIEEGVIV SLVCLVFLFH
FRSALVAIIT LPLAVLLAMI AMRWIGLTSN IMSLGGIAIA VGAMVDAAIV MIENAHKHIE
REEAKPAEQR RPRLELVIVA CREVGPSLFF SLLIITVSFL PVFALQDQEG RLFRPLAYTK
SFSMLFAAVL SVTVTPFLMV WLVRGKIPAE ENNPINRFLI WIYQPVAMLA LRLRYVMVGV
AVFATVAIIP IYRSLGSEFM PPLWEESVLF MPATLPAASI QTMRQAIQEQ DAILLGFPEV
ASVFAKAGRA ESATDPAPLE MVETVINLKP PEQWRNGITP DKLIAEMNAA LNAKMKGFSN
SWTMPIKARI DMLSTGIRTP LGVKVFGPDL AEIGRILSNV EAAVGTIPGT RSVFAERVAQ
GHYLDFDIDR DAIARYGLSV MDVQEVIQAA VGGANLTQTI EGRERYPVNV RYGRDLRDDV
GKLQRILVAT PLGAQVPLQE LAKLRFVDGP GLIKSEAAQL VGYAYIDIAD RDTGSYMNDA
RKIVGEMVKL PPGYRLEWSG SFEGMQRASQ RLLYVIPITL AVIFLLLYLN ARSIAKALIV
MIAVPFSLVG AFFLLWLLGY HLSVAVWVGI IALAGVDAET GMVMLLYLDV VYERWKEEGR
MRSIHDLESA VMEGAVQRVR PKMMTVLAIL MGLLPIMWSS GAGSDVMKRI AAPMVGGVVT
SFLLTLLIYP AIYVIWKWWS EVRYRQAAN
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