| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0989 |
|---|
| Symbol | |
|---|
| ID | 6408644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1053941 |
|---|
| End bp | 1055845 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642710903 |
|---|
| Product | lipid A ABC exporter family, fused ATPase and inner membrane subunits |
|---|
| Protein accession | YP_001990021 |
|---|
| Protein GI | 192289416 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAC CGAATAAACC GCAGAGCTCC AACTCCGACG CGTCGGCGAT CAGTTTGTCG
CTGGACGCGA TCGCGGCGAC CGAGAACGTC GGGCCGCGCA CCGGCACCTT GCGGGCCGAT
GCCGATCCGA GCCAGGTCGA GGAGGTCGCG GCCGTCGTCA AGCGCAGCCG GCTGAAGCCG
CTGCTCTCGC TGATGCCGTA TGTGGCCCGC TACCGCGGCC GCGCCACGCT GGCGCTGATC
GCCCTGATCG TCGCGGCCGC CACGACCCTG GTGGTTCCTG TCGCGGTGCG TCGGCTGATC
GATTTCGGCT TCAGCGCCGA AGGTGTCGAG CTGATCAACG GCTATTTCAG CGTCATGCTC
GGCGTCGTGG TGGTACTCGC GGCCGCCAGC GCGGCCCGGT ATTACCTGGT GATGACGATC
GGCGAGCGGA TCGTCGCCGA CGTCCGGCGC GACGTGTTCC GGCATCTCAC GGCGCTGTCG
CCGGCGTTCT TCGATTCCGC CCGCAGCGGC GAGCTGATTT CGCGGCTGAC CGCCGATACC
ACCCAAATCA AATCCGCCGT CGGCGCCTCG GTGTCGATCG CGCTGCGCAA CATGCTGCTG
TTCGTCGGCG CGATCTCGAT GATGGTGATC TCGAGCCCGC GGCTGTCCGG CTTCGTGCTG
GCGGCGATTC CGCTGATCGT GATTCCGCTG GTGGCGTTCG GGCGCTGGGT GCGGAGGCTG
TCGCGCAATG CGCAGGACAC GCTGGCGGAC GCTTCGGCCT ATGCGGCCGA ACTGGTCGGC
GCGATCCGTA CCGTGCAGGC CTACACCAAC GAACGCGTCG CCAATGCGCG GTTCGGCGGC
GCGGTCGAAG AGTCCTACGA GGCGGCGCGC AGTTCGACCG GGGCGCGGGC GCTGCTCACC
GCGATCATCA TCTTCATCGT GTTCGCCAGC GTGGTGGCGA TCCTGTGGGT CGGCTCGCAC
GACGTCGCCA TCGGCGCCAT GTCGCCGGGC CGGCTCGGCC AGTTCATTCT GTATGCGGTG
TTTGCCGCCT CCAGCCTCGG CCAGCTCAGC GAAGTGTGGG GCGAAGTCTC GGCGGCCTCG
GGCGCGGCCG AGCGGCTGTT CGAAATCCTG CGGGTGAAGC CCGAGATCGC CGCGCCGGCG
AAGCCGAAGG CGCTGCCGAT GCCGGTGCGC GGCGACGTGC TGTTCGACAA TGTCAGCTTC
TCCTATCCGA CCCGGCCGGA CTTCCTGGCG CTCGACGGCC TGTCGCTGAG CATCAAGGCC
GGTGAGAAGG TGGCGATCGT CGGCCCCTCC GGCGCCGGCA AGAGCACGCT GTTTCATCTG
TTGCTGCGGT TCTACGATCC GACCTCCGGC ACGATTGCGC TGGACGGTGT CGCCATCAAC
GCCGCCGATC CGCAGGCGGT CCGCGAGCGG ATCGCTCTGG TGCCGCAGGA CTCGGTGGTG
TTCGCCGCGA CCGCGCGCGA CAACATCAGT TTCGGCCGCG ACGACGCCAG TGAGCTCGAC
GTCGAGCGCG CCGCCCAGCA GGCCCACGCC ACTGAATTCA TCTCGCGTCT GCCGGAAGGC
TTCGACACCA AGCTCGGCGA ACGCGGCGTG ACGTTGTCCG GCGGCCAGCG CCAGCGGATC
GCCATCGCCC GTGCGATCCT GCGCGACGCG CCGCTGCTGC TGCTGGACGA GGCGACCTCG
TCGCTCGACG CCGAAAGCGA AGTGCTGGTG CAGACCGCGC TGCAGCAGCT GATGCGCGAC
CGCACCACGC TGGTGATCGC CCATCGGCTC GCCACCGTGC TGTCGTGCGA CCGCATCGTG
GTGATGGAGC ACGGCCGCAT CGTCGAACAG GGCACCCATG CCCAACTCGT CGCCCGCGGC
GGCCTCTACG CGCGTCTCGC CAAGCTGCAG TTCGAGGCGG CGTAG
|
|---|
| Protein sequence | MTAPNKPQSS NSDASAISLS LDAIAATENV GPRTGTLRAD ADPSQVEEVA AVVKRSRLKP
LLSLMPYVAR YRGRATLALI ALIVAAATTL VVPVAVRRLI DFGFSAEGVE LINGYFSVML
GVVVVLAAAS AARYYLVMTI GERIVADVRR DVFRHLTALS PAFFDSARSG ELISRLTADT
TQIKSAVGAS VSIALRNMLL FVGAISMMVI SSPRLSGFVL AAIPLIVIPL VAFGRWVRRL
SRNAQDTLAD ASAYAAELVG AIRTVQAYTN ERVANARFGG AVEESYEAAR SSTGARALLT
AIIIFIVFAS VVAILWVGSH DVAIGAMSPG RLGQFILYAV FAASSLGQLS EVWGEVSAAS
GAAERLFEIL RVKPEIAAPA KPKALPMPVR GDVLFDNVSF SYPTRPDFLA LDGLSLSIKA
GEKVAIVGPS GAGKSTLFHL LLRFYDPTSG TIALDGVAIN AADPQAVRER IALVPQDSVV
FAATARDNIS FGRDDASELD VERAAQQAHA TEFISRLPEG FDTKLGERGV TLSGGQRQRI
AIARAILRDA PLLLLDEATS SLDAESEVLV QTALQQLMRD RTTLVIAHRL ATVLSCDRIV
VMEHGRIVEQ GTHAQLVARG GLYARLAKLQ FEAA
|
|---|
| |