| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0985 |
|---|
| Symbol | |
|---|
| ID | 6408640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1051061 |
|---|
| End bp | 1052059 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710899 |
|---|
| Product | NAD(P)H quinone oxidoreductase, PIG3 family |
|---|
| Protein accession | YP_001990017 |
|---|
| Protein GI | 192289412 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR02824] putative NAD(P)H quinone oxidoreductase, PIG3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.567707 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCGA TCCCTTCGCA AATGACCGTG GTTGGGATCA GCAAGCCCGG CGGTCCCGAG
GTCCTGCTGC CCGAGACGCG GGACGTGCCG AAGCCCGGCC CCGGGGAAAT CCTGGTGAAA
GTGACGGCCG CCGGCGTCAA TCGTCCCGAT GTGGCACAGC GCTCCGGCAG CTATCCGCCG
CCGCCCGGTG CCAGCGATCT GCCGGGCCTG GAAATCGCCG GTGAAGTGGT GGCGCTCGGC
GACGGCGCCT CCCGGCACAA GCTCGGCGAC AAGGTGATGT CGCTGGTGGC TGGTGGCGGC
TACGCGGAAT ATTGCATCGC CCAGGACTCG CAGGCGATGA AGGTACCGGC CGCCTATTCG
ATGATCGAAG CCGGCGCCAC GCCCGAGACG CTGATGACGG TGTGGCACAA CTTGTTCGAG
CGCGGCGGCC TGCAGCCCGG CGAAACGTTG CTGGTGCACG GCGGTTCGTC CGGTATCGGT
ACGATGGCGA TCCAGCTCGC GGTCGCACTC GGATCGAAAG TGATCACCAC CGTCGGCTCG
CAGGACAAAG CCGACGCCTG CCTCAAGCTC GGCGCCAGCC GCGCCATCAA CTACAAGACC
GAGGATTTCG TCGCGGCGGT GAAGGAAGCC ACTGGCGGCA AGGGCGTCGA GGTAATCCTC
GACATGGTCG GCGGCGATTA CATCGAGCGC AACTACGACG CCGCGGCGAT GGACGGCCGC
ATCGTGCAGA TCGCGTTCCT TGGCGGTGCC AAGGCCAACG TCAACTTCGT CAAGCTGATG
ACCAAGCGGC TTCACCACAC CGGCTCGACG CTGCGGCCGC GCTCCAACGC CGACAAGGCC
GCGATGGTCG CGGCGATCGA AGCCAAGGTG CTACCTCTGC TCGAGCAGGG CCGGATCAAG
CCGCTGATCG ACGGCACCTT CGCGCTGCGG GACGCCGCCG ATGCTCACCG GCGGATGGAA
ACCAGCCAAC ATATTGGCAA AATTGTGTTG ACTGTGTGA
|
|---|
| Protein sequence | MEPIPSQMTV VGISKPGGPE VLLPETRDVP KPGPGEILVK VTAAGVNRPD VAQRSGSYPP
PPGASDLPGL EIAGEVVALG DGASRHKLGD KVMSLVAGGG YAEYCIAQDS QAMKVPAAYS
MIEAGATPET LMTVWHNLFE RGGLQPGETL LVHGGSSGIG TMAIQLAVAL GSKVITTVGS
QDKADACLKL GASRAINYKT EDFVAAVKEA TGGKGVEVIL DMVGGDYIER NYDAAAMDGR
IVQIAFLGGA KANVNFVKLM TKRLHHTGST LRPRSNADKA AMVAAIEAKV LPLLEQGRIK
PLIDGTFALR DAADAHRRME TSQHIGKIVL TV
|
|---|
| |