Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0984 |
Symbol | |
ID | 6408639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 1048059 |
End bp | 1050938 |
Gene Length | 2880 bp |
Protein Length | 959 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642710898 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001990016 |
Protein GI | 192289411 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCGTCTAA TCAGATGCCT CGCGCTGCTG GCGCTGGGCG TGATGTTGGT TGCGGCTGCT CCGCAGGCTC ACGCCCTCGA TGCCGTCAGT GTCCGCAGCG ACGCGCCGGC GATCGACCTC ACCGGTGTGC TGGAGCATCT GCACAGCGAC AACGACCGGG TTCAGATTTC CACCGCGCCC GGCAATGACG GCATCGTCCG CCGCGTCGAG GTGCGCGCCC GCGAAGGCGG TCAGAACTGG GTGGTGTTCG CGCTCGCCAA CAACTCCGAC GACCAGCTCG ATCGTTTGAT CGTAGCGCCG CATTATCGAA TGGTCGGCTC CGGACTGTTG TGGCCCGACC TCGGCATGTC GCGCATTGCC ACCATCACGC CGTCGACCGG CGACCGCCCC GAGCGGCAGG ACAGCGCGAC CGCCGACATC TTCCGCGTCA CGCTCGATCC CGGCTCGGTG ATCACCTTCG TGGCCGAGCT GCGCACCGAC AAGCTGCCGC AGCTCTATCT GTGGGAGCCG GAAGCCTACA AGGACAAGGT CAACTCGTTC ACGCTGTACC AGGGCATCGT GATCGGCATC TCCGGCCTGT TGGCGCTGGT GCTGACCATC CTGTTCGTGG TCAAGGGCAG CATCATGTTC CCGGCCGCTG CGGCGCTGGC CTGGGCGGTG CTGGTCTATA TCGGCATCGA TTTCGGCTTC TGGGGCAAGG TGCTGGACAT GTCGTCCGGC GCCGAACGGG TTTGGCGCGC TTCGGGCGAA GCGATCCTTG CGGCAACGCT GCTCGTCTTC CTGTTCGCCT ATCTCAATCT CAGTCGCTGG CACGTCCGCT ATTCGCACAT CACGCTGGGA TGGCTCGCCT TCCTTGGCTC GCTGGTGGCG CTGGCGCTGT TCGATCCGGC GGTCGCGTCC GGCATCGCCC GGATTTCCCT GGTGGCGATC GCGTTCGCCG GCTTCGCGCT GATCGTCTAT CTGTCGACCC ACGGCTTCGA CCGCGCCGTG CTGCTGATCC CGACCTGGTT CCTGCTGGTG GTGTGGGTGG TGGCATCCGG CATGGCGGTG GCAGGCACCG TCACCAACGA CATCGTCGGC CCGGCGCTGC TCGGCGGCCT GGTGCTGATC GTGATGCTGA TCGGCTTCAC CGTGATGCAG CACGCGTTCT CGGGCGGCGG CGCCACTGGC GGGGTGATCT CCGACGTCGA GCGCCGCGCC CTGGCGCTGA TCGGCTCCGG CGATCTGATC TGGGATTGGG ATGTCTCGGC CGACAAGGTG TTCACCAGCC CCGAGACCGA AGCGCTGCTC GGCCTGAAGC GCGGCGCGCT GGAAGGCTCC GCGGCGAGCT GGCTCGAAGT GCTGCACCCG CTCGACCAGG ACCGCTTCCG CGCCGCGCTC GACAGCGTGC TCGACCAGCG CCGCGGCCGG CTGACGCAGG ACTTCCGGCT GCGTACCCCG GACGGCCACT TCATGTGGTT CTCGCTGAAG GCGCGCCCGG TGGTCGGCAC CGACGGCGAA GTCACCCGCG TGGTCGGCAC GTTGACCGAC GTCACCGAAA TCAAGAACGC CGAAGAGCGG ATGCTGCACG ACAGCGTGCA CGACAACCTT ACCGGCCTGC CCAACCGCAA GCTGTTCATC GACCGGCTCG GCGCGGTGTC GAACTTCGCC AAGACTATGC CGACGCTGCG ACCGACCCTG ATGGTAATCG ACCTTGATCG CTTCAAGCAG GTCAACGATT CCGTCGGCAT CGCGGTCGGC GATTCGATCC TGCTGACGCT GGCGCGCCGG CTCAGCCGCA TCCTGAAGCC GCAGGACACG CTGGCGCGGA TCGCCGGTGA TCAGTTCGGG CTGATCCTGC TGTCGGAGCA GGACCCGGCC AAGATCACCG CCTTCGCCGA GACCATCCGC AAGACCATCA AGGCGCCGAT CGCGTTCAAC GACCGCGAGA TCTTCCTCAC CGCCTCGATC GGCCTCGCCC TGTCCGACCC GCAGACCCAG CTGTCCGACG AGATCATCAA GGACGCCGAG CTGGCGATGT ATCACTCCAA GCGGATCGGC GGCGACCGCA TCGACGTTTA CAAGCCGGCA ATGCGGGCGC GGAAGTCGGA CCGGCTGACG CTGGAATCCG AACTGCGCCG GGCGATCGAG CGCAAGGAAA TCACCATCCT GTACCAGCCG ATCGTGCGGC TCGAGGATCG GTCGATCGCA GGCTTCGAAG CACTCGCGCG CTGGGATCAT CCCAAGCTCG GACGGATGTC GCCAAGCGAG TTCATCTCGA TCGCCGAAGA GATCGGGCTG ATCGTCGAAC TCGGCACCTT CGTGCTCGAC CAGACCGCCA AGCAGCTCTC GATCTGGCAG CGTGCGATGC GCGCCCGCGA GCCGATCTTC GCCTCGGTCA ACGTGTCGTC CCGGCAGCTG CTACGCCACG ATCTGCTGCA CGATATCCGC ACCGTGACGT CGCGCTCGTC GGTGGCGCGC GGAACGCTGA AGCTCGAGCT CACCGAATCG CTGGTGATGG AGAATCCGGA GCACGCGGCG CAGATGCTGC AGCGGATCCG CGAACTCGGC GTCGGCCTGG CGCTCGACGA TTTCGGCACC GGCCACTCGT CGCTGAGCTA CCTGCAGCGC TTCCCGTTCG ACACCATCAA GATCGACCAG TCGTTCGTCC GCACGACCAG CCGCGGCACC CGCCCGGTGA TCCTGAAGTC GATCATCGCG CTGGCGCACG ACCTCGGCAT GGACGTGGTG GCGGAAGGCG CCGAGACGGA TTCGGATGCG GTGGAGCTGT ATCAGCTCGG CTGCGAATAC GCCCAGGGCT TCGCCTTCGG CGAACCGATG GACGTCGATG CGGCGATGAA GCTGCTGACC GAAGAACAGC GCCTGGAAGC CGCGAGCTGA
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Protein sequence | MRLIRCLALL ALGVMLVAAA PQAHALDAVS VRSDAPAIDL TGVLEHLHSD NDRVQISTAP GNDGIVRRVE VRAREGGQNW VVFALANNSD DQLDRLIVAP HYRMVGSGLL WPDLGMSRIA TITPSTGDRP ERQDSATADI FRVTLDPGSV ITFVAELRTD KLPQLYLWEP EAYKDKVNSF TLYQGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGIDFGF WGKVLDMSSG AERVWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLAFLGSLVA LALFDPAVAS GIARISLVAI AFAGFALIVY LSTHGFDRAV LLIPTWFLLV VWVVASGMAV AGTVTNDIVG PALLGGLVLI VMLIGFTVMQ HAFSGGGATG GVISDVERRA LALIGSGDLI WDWDVSADKV FTSPETEALL GLKRGALEGS AASWLEVLHP LDQDRFRAAL DSVLDQRRGR LTQDFRLRTP DGHFMWFSLK ARPVVGTDGE VTRVVGTLTD VTEIKNAEER MLHDSVHDNL TGLPNRKLFI DRLGAVSNFA KTMPTLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LSRILKPQDT LARIAGDQFG LILLSEQDPA KITAFAETIR KTIKAPIAFN DREIFLTASI GLALSDPQTQ LSDEIIKDAE LAMYHSKRIG GDRIDVYKPA MRARKSDRLT LESELRRAIE RKEITILYQP IVRLEDRSIA GFEALARWDH PKLGRMSPSE FISIAEEIGL IVELGTFVLD QTAKQLSIWQ RAMRAREPIF ASVNVSSRQL LRHDLLHDIR TVTSRSSVAR GTLKLELTES LVMENPEHAA QMLQRIRELG VGLALDDFGT GHSSLSYLQR FPFDTIKIDQ SFVRTTSRGT RPVILKSIIA LAHDLGMDVV AEGAETDSDA VELYQLGCEY AQGFAFGEPM DVDAAMKLLT EEQRLEAAS
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