| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0963 |
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| Symbol | |
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| ID | 6408617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1030224 |
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| End bp | 1031000 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710877 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001989996 |
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| Protein GI | 192289391 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGTACA AGCCCCTCAG CCGTTCCGTC AAAGGCCTGC GCGTTCTCGT CACAGGCGCC
GCGAGCGGCA TGGGCCGTGC CACCGCGCAC GTGTTCGCCG AGGAAGGCGC ACGCGTCGCC
GTCACCGACG TCACCCTCGC CGGCGCGCAG CCGGTTGCCG ACGCCATCAA GACGCGCGGC
GGCGACGCAA CCGCGTTCGC GCTCGATGTC GGCGATGCAC AGGCGATCAG GAGCGGCGTC
GAACACATCG CGCAATCACT CGGTGGGCTC GACATCGTCA TCAACAATGC CGGCATCTCG
GCAGCGCTAC CGATCGACGA CGCCAACTAC GATGCGGTGT GGGAGCGCGC GCTCAATGTT
CTGCTCACCG CGCATCCGCG CGTGATCCGC GCCGCGTTGC CGTATTTGCG CAAGTCGCAA
TCCCCGCGCA TCGTCAATAT CGCGTCTACC GAAGCGCTCG GCGCGACCGC AACTCACAGC
CCGTATTCGG CTGCGAAAGC CGGCGTTACC GGACTGACGC GCTCGCTCGC AGTCGAACTC
GGCCCCGAAG GCATCACCGT CAACTGCATC TGCCCCGGCC CGATCACCAC CGGCATGACC
GACCGCATCA GCGCTGAGCA CAAACAGAAA TACGCGCGAC GTCGCACCGC GCTACACCGC
TACGGCGACC CGGAAGAAGT CGCCCACATG ACGCTGAGCC TGTGCCTCCC CGCCGCATCG
TTCATCACCG GCGCGGTGAT CCCGGTCGAT GGCGGGTTGA TGGCAAGGAA TGCGTGA
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| Protein sequence | MSYKPLSRSV KGLRVLVTGA ASGMGRATAH VFAEEGARVA VTDVTLAGAQ PVADAIKTRG
GDATAFALDV GDAQAIRSGV EHIAQSLGGL DIVINNAGIS AALPIDDANY DAVWERALNV
LLTAHPRVIR AALPYLRKSQ SPRIVNIAST EALGATATHS PYSAAKAGVT GLTRSLAVEL
GPEGITVNCI CPGPITTGMT DRISAEHKQK YARRRTALHR YGDPEEVAHM TLSLCLPAAS
FITGAVIPVD GGLMARNA
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