Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0959 |
Symbol | |
ID | 6408613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1020134 |
End bp | 1024861 |
Gene Length | 4728 bp |
Protein Length | 1575 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642710873 |
Product | Glutamate synthase (ferredoxin) |
Protein accession | YP_001989992 |
Protein GI | 192289387 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0069] Glutamate synthase domain 2 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.434425 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGGGT CTGAGTGCGA GCGCGAAATT ATGGTTGCCA ATGCGCTGAC GGCGGACTCG GCTGTCAAAA CCACCGCGCG TGAACACACC TGGCGTCCGC CGGCCGAAGG TCTGTACGAC CTGTCGCGGG AAAAGGACGC CTGCGGCGTC GGCTTCATCG CCAACATCAA GGGCGTCAAG TCGCATCAGA TCGTCTGTGA CGCGCTGCGT ATCCTGTGCA ACCTCGAGCA CCGCGGTGCC GTCGGTGCCG ATCCGCGCGC CGGCGACGGC GCCGGCATTC TGGTGCAAAT CCCGCACGCC TTCTTCAGCC GCAAGGCCAC CGAACTCGGC TTCTCACTGC CGGCGCCGGG CGAATACGCG GTCGGCGCGC TGTTCATGCC GCGCGAGACT TCGTGGCGGA AGGTGATCAA GAGCATCATC GAGGATCGCA TCAAGGCCGA AGGCCTGACC TTCCTCGGCT GGCGCGACGT GCCGACCGAC AACTCTTCGC TCGGCGAGAC CGTGAAGCCG ACCGAGCCTG CCAATATGCA GGTGTTCATC GGCCGCGGCA CCGCGATCAC TTCGGAAGAC GATTTCGAGC GCAAGCTCTA CATCCTGCGC AAGTCGATCT CGAACGCGAT CTATCAGCGT CGCGAGCGCG CGCTTGCTGG TTACTATCCG GTGTCGCTGT CGTGCCGCAC CGTGATCTAC AAGGGTATGT TCCTGGCCGA CCAGCTCGGC AAGTACTATC CGGACCTGCA CGAGGACGAC TTCGCCAGCG CGCTGGCGCT GGTGCATCAG CGGTTCTCGA CCAACACCTT CCCGACCTGG TCGCTGGCGC ATCCGTACCG CATGGTCGCG CACAACGGCG AAATCAACAC CCTGCGCGGC AACGTCAACT GGATGGCGGC GCGTCAGGCG TCGGTGCATT CGGAGCTGTA CGGCGAAGAC ATCAGCCGGC TGTGGCCGAT CTCCTATGAA GGCCAGAGCG ACACCGCCTG CTTCGACAAC GCGCTCGAAT TCCTGGTGCG CGGCGGCTAC TCGCTGACGC ACGCGGTGAT GATGATGATT CCGGAAGCGT GGGCCGGCAA CCCGCTGATG GACGAGAAGC GCCGCGCTTT CTACGAGTAC CACGCCGCTC TGATGGAGCC GTGGGACGGC CCGGCTGCGC TCGCCTTCAC CGACGGTCGC CAGATCGGTG CCACGCTCGA CCGTAACGGT CTGCGTCCGG CGCGCTATCT CGTTACCAAG GACGACCGCA TCGTGATGGC GTCCGAAATG GGCGTGTTGA AGATTCCGGA AGATCAGATC GTCACCAAGT GGCGGCTGCA GCCCGGCAAG ATGCTGCTGG TCGACCTCGA GCAGGGCCGC CTGATTCCGG ACGAAGAAAT CAAGGCGCAG CTCGCCGCCA GCCAGCCCTA TGCCGACTGG CTGCATCGCA CCCAGATCGT GCTGGAAGAG CTGAAGGAAG CGCCGGTCAA GGGCCAGCGC TCTAACCTGC CGCTGCTCGA TCGGCAGCAG GCGTTCGGCT ACACCCAGGA AGACATCTCG ATCCTGCTGA CGCCGATGGC GTCGACCGGC GAGGAAGCCA ATGGCTCGAT GGGCAACGAC ACCCCGCTGT CGGCGCTGTC GGATAAGCCG AAGCTGCTCT ACACGTACTT CAAGCAGAAC TTCGCCCAGG TCACCAACCC GCCGATCGAT CCGATCCGCG AGGAGCTGGT GATGAGCCTG GTGTCGATCA TCGGTCCGCG TCCGAACCTG TTCGATACCG AAGGGCTCGC CGGCACCAAG CGCCTGGAAG TGCGTCAGCC GATCCTGACC GACGGCGACC TCGAGAAGAT CCGTTCGATC TCTGAAGTTG GCGACTCGCA TTTCAAGTCG CGCACGCTCG ACACCACCTT CCACGCCGGG CTGGGCGCGT CGGGCATGGA GCAGGTGCTC GACGAGCTCA ACGGTCGCGC TGAATCCGCG GTGCGTGACG GCGTCAACAT CATCATCCTG AGCGACCGCG CCGCCGGTTC CGACCGGATT CCGATCCCGG CGCTGTTGGC TTGCGCCTCG GTGCATCATC ACCTGATCCG CGTCGGCCTG CGGACCTCGG TCGGTCTGGT GATCGAGTCC GGCGAGCCGC GCGAAGTGCA TCACTTCGCC TGCCTGGCCG GTTTCGGCGC CGAAGCCATC AACCCGTATC TGGCGTTCGA GACCATCATC GCGCTGAAGG ACCGGCTGCC GACCAAGCTC GACGACAAGG AAATCGTCAA GCGCTACATC AAGTCGATCG GCAAGGGCCT GCTCAAGGTC ATGTCGAAGA TGGGCATCTC GACCTATCAG TCGTATTGTG GCGCGCAGAT CTTCGACGCC GTCGGTCTGC GTCACGACTT CATCGCCAAG TACTTCGCCG GCACCCACTC GCAGATCGAA GGCGTCGGCC TCGCCGAAAT CGCCGAAGAG ACCGTGCGCC GGCATCGCGA CGCGTTCGGC ACCGCGCTGG TGTACAAGAC TGCGCTCGAC GTCGGCGGCG AATACGCCTA CCGCACCCGC GGCGAAGATC ACGCCTGGAC CGCGGACTCG GTCGCGACCT TGCAGCATGC GGTGCGTGGC AATTCGCAGG AGCGCTATCG CGCGTTCGCC AAGCTGCTCA ACGAGCAGCA GGAGCGGCTG CTGACGCTGC GTGGCCTGTT CAAGATCAAG GGCGCCGAGG CCGAAGGCCG CAAGCCGGTG CCGCTCGCCG AAGTCGAGCC AGCGGCCGAG ATCGTCAAGC GGTTCGCGAC CGGCGCGATG AGCTTCGGAT CGATCTCGCG CGAGGCGCAT ACCACGCTGG CGATCGCTAT GAACCGGATC GGCGGCAAGT CGAACACCGG TGAGGGCGGC GAGGAGCCGG ATCGCTTCAA GCCAATGGCG AACGGCGACT CGATGCGCTC GGCGATCAAG CAGGTCGCCT CGGGCCGGTT CGGCGTCACG ACGGAATACC TCGCCAATTC CGACATGATC CAAATTAAGA TGGCGCAGGG TGCCAAGCCC GGCGAAGGCG GTCAGTTGCC CGGCCACAAG GTCGACGCCA CGATCGCCGC GGTGCGCCAC TCGACCCCCG GCGTCGGCCT GATCTCGCCG CCGCCGCACC ACGACATCTA TTCGATCGAA GATCTGGCGC AGCTGATCTA CGATCTGAAG AACGTCAATC CGTCGAGCGC AATCTCGGTG AAGCTGGTGT CGGAAATCGG CGTCGGCACC GTCGCGGCGG GCGTCGCCAA GGCGCGCGCC GACCACGTCA CCATCTCGGG CTTCGAAGGC GGCACCGGCG CTTCGCCGCT GACCTCGATC AAGCACGCCG GTTCGCCCTG GGAAATCGGC CTCGCCGAAA CCCATCAGAC CCTGGTGCGC GAGCGGCTGC GGTCGCGTAT CGTCGTCCAG GTCGACGGCG GCTTCCGCAC CGGCCGTGAC GTCGTGATCG GCGCGCTGCT CGGCGCCGAC GAGTTCGGCT TTGCCACCGC GCCGCTGATC GCGGCCGGCT GCATCATGAT GCGCAAGTGC CATCTCAACA CCTGCCCGGT CGGCGTCGCG ACGCAGGACC CGGTGCTGCG CAAGCGCTTC ACCGGCCAGC CCGAGCACGT CATCAACTAC TTCTTCTTCG TCGCCGAGGA AGTCCGCGAG CTGATGGCGA GCCTCGGCTA TCGCAGCTTC AACGAGATGG TCGGCCAGTC GCAGATGCTC GATCATGCCG CTCTGGTCGC ACACTGGAAG GCCAAGGGCC TCGACTTCTC CAAGCTGTTC TTCAAGCAGA AGGCGGACAA GGGCCAGACG ATCTTCCATT CGGAAGGCCA GGATCATCAT CTCGACAGCG TGCTCGACCG CAAGCTGATC GCCAAGTCGC AGGCGGCGAT CGACCGCGGC GCGCCGGTGA AGTTCGAGAT CGAGATCAAC AACACCGACC GCTCGGCCGG CGCGATGCTG TCCGGCACCG TCGCCAAGCA TTACGGCCAC GCCGGCCTGC CGGCCGACAC CATCCAGGTG CATCTCAAGG GCACCGCGGG TCAGGCGTTC GGCGCTTGGC TGGCGCGCGG CATCACCTTC GATCTCGAAG GGGAAGGCAA CGACTACGTC GGCAAGGGCC TGTCGGGCGG CAAGATCATC GTCCGGCCGC CGGCCAATTC GGGCATCGTG CCGGAGCATT CGATCATCGT CGGCAACACC GTGATGTACG GAGCGATCGA GGGCGAGTGC TACTTCCGCG GCGTCGCCGG CGAACGCTTC GCGGTGCGTA ACTCGGGCGC GGTCGCGGTG GTCGAAGGCG CCGGCGATCA TTGCTGCGAA TACATGACCG GCGGCATCGT CGTGGTGCTC GGCAAGACCG GTCGTAACTT CGCGGCCGGC ATGTCGGGCG GCGTCGCCTA CGTGCTGGAC GAGGACGGCA GCTTCGCCAA GACCTGCAAC ATGGCGATGG TCGAGCTCGA GCCGGTGCTG TCGGAAGAGA TGATCAACGC CGGCACGTTC CATCAGTCCG GCGATCTCGA AGCGCATGGC AAGGTCGACG TGTTCGCCGA TCTGCTCGGC GCCGACGTCG AGCGGCTGCA CGTGCTGATC TCGCGCCACG CCAAGTACAC CGGCTCCAAG CGCGCCCAGG ACATCCTGGC GAACTGGAAG AGCTACTTGC CGAAATTCCG CAAGGTGATG CCGGTCGAGT ATCGCCGCGC GCTGCGCGAG ATGAAAGCTC GCGCCGCCGA GGAGCCGAAG ATCGCGATCG GGGCGTAA
|
Protein sequence | MSGSECEREI MVANALTADS AVKTTAREHT WRPPAEGLYD LSREKDACGV GFIANIKGVK SHQIVCDALR ILCNLEHRGA VGADPRAGDG AGILVQIPHA FFSRKATELG FSLPAPGEYA VGALFMPRET SWRKVIKSII EDRIKAEGLT FLGWRDVPTD NSSLGETVKP TEPANMQVFI GRGTAITSED DFERKLYILR KSISNAIYQR RERALAGYYP VSLSCRTVIY KGMFLADQLG KYYPDLHEDD FASALALVHQ RFSTNTFPTW SLAHPYRMVA HNGEINTLRG NVNWMAARQA SVHSELYGED ISRLWPISYE GQSDTACFDN ALEFLVRGGY SLTHAVMMMI PEAWAGNPLM DEKRRAFYEY HAALMEPWDG PAALAFTDGR QIGATLDRNG LRPARYLVTK DDRIVMASEM GVLKIPEDQI VTKWRLQPGK MLLVDLEQGR LIPDEEIKAQ LAASQPYADW LHRTQIVLEE LKEAPVKGQR SNLPLLDRQQ AFGYTQEDIS ILLTPMASTG EEANGSMGND TPLSALSDKP KLLYTYFKQN FAQVTNPPID PIREELVMSL VSIIGPRPNL FDTEGLAGTK RLEVRQPILT DGDLEKIRSI SEVGDSHFKS RTLDTTFHAG LGASGMEQVL DELNGRAESA VRDGVNIIIL SDRAAGSDRI PIPALLACAS VHHHLIRVGL RTSVGLVIES GEPREVHHFA CLAGFGAEAI NPYLAFETII ALKDRLPTKL DDKEIVKRYI KSIGKGLLKV MSKMGISTYQ SYCGAQIFDA VGLRHDFIAK YFAGTHSQIE GVGLAEIAEE TVRRHRDAFG TALVYKTALD VGGEYAYRTR GEDHAWTADS VATLQHAVRG NSQERYRAFA KLLNEQQERL LTLRGLFKIK GAEAEGRKPV PLAEVEPAAE IVKRFATGAM SFGSISREAH TTLAIAMNRI GGKSNTGEGG EEPDRFKPMA NGDSMRSAIK QVASGRFGVT TEYLANSDMI QIKMAQGAKP GEGGQLPGHK VDATIAAVRH STPGVGLISP PPHHDIYSIE DLAQLIYDLK NVNPSSAISV KLVSEIGVGT VAAGVAKARA DHVTISGFEG GTGASPLTSI KHAGSPWEIG LAETHQTLVR ERLRSRIVVQ VDGGFRTGRD VVIGALLGAD EFGFATAPLI AAGCIMMRKC HLNTCPVGVA TQDPVLRKRF TGQPEHVINY FFFVAEEVRE LMASLGYRSF NEMVGQSQML DHAALVAHWK AKGLDFSKLF FKQKADKGQT IFHSEGQDHH LDSVLDRKLI AKSQAAIDRG APVKFEIEIN NTDRSAGAML SGTVAKHYGH AGLPADTIQV HLKGTAGQAF GAWLARGITF DLEGEGNDYV GKGLSGGKII VRPPANSGIV PEHSIIVGNT VMYGAIEGEC YFRGVAGERF AVRNSGAVAV VEGAGDHCCE YMTGGIVVVL GKTGRNFAAG MSGGVAYVLD EDGSFAKTCN MAMVELEPVL SEEMINAGTF HQSGDLEAHG KVDVFADLLG ADVERLHVLI SRHAKYTGSK RAQDILANWK SYLPKFRKVM PVEYRRALRE MKARAAEEPK IAIGA
|
| |