| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0954 |
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| Symbol | |
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| ID | 6408608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1014577 |
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| End bp | 1016085 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642710868 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001989987 |
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| Protein GI | 192289382 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0641916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACACGC ACGGTCTCTT CAACAAGATC AGCAAGGAGC TCCACCGCCG GCGCCGGATG
TCGGCGCGGG TGATGGTGGC GTTCTCGCTG GTCACCGTGC TTGGGTTTTC CGCGGTGTGC
GGCAGCGTGC TGCTCGACAT GCGGCGCGGC GCCGAAGAGC TGGCGCGGCA GACGCTCGAA
AATCTCGCCG CCTCGATGGA CGCCGACATC AACCGCAATG TCGAACTCTA CGACGCCTCG
CTGCGTGCGG TGGCGTCCAA TCTGGTGCTG CCCGAACTCA GTCAGGTCGA CGCCAAGCTG
GCGCGGCTGA TCCTGTTCGA TCACCCGGTC ACCGGTCCGC ATTTCGGAGC GATCCGGGTT
TATGACGAGC ACGGCAATCT CACCGGCGAT TCCGCGCTGA CCAACCCGCA GAAAGAAAAC
CGCGCGAGCG AGCCGTTCTT CACGGTGCAG CGCAACGAGC CTTATGTCGG GCTGTATATC
AGCAAACCGC AGCAGGTCGA CGGCCACTAC TCGGTGATCC TCAGTCGCCG TGTCACCGGC
TCCGACGGCC GGTTTCTCGG CGTCGTCGCC GGCTCGATCA AGTTCGATTA TTTCCAGGAC
CTGTTCAAGC GGCTGCGGTT GCGTCCGCAG GACATGATCG CGGTGATCGC GCACGACGGC
ACCCTGATCG TCCGCACCCC GTTCGAGCCG GAGCTGATCG GCAAGAACAT GCTGGTCACG
TCGGGTGTGC AGAAGATGTT CGGTCGCCGC AACGGCTGGT TCGCCGGCAC TGGGACGCTG
GACGGCGTCA AGCGGATGTT CGTCTGGAGC GACAGCACCA AGCCGCTGGT GGTGCTGGTC
GCGAAGTCGT GGAACGACAT CTACGCGATG TGGCGCAAGG AGGCGACCTG GATCGGCATC
GTGCTGTTGG CGCTGGCCGC TTTCGTCGCC GCCGTCACGG TGTTCTTCAT CCGCGAGATC
GAGCGCCGCG CCGCAGCCGA GCGCCGGCTC GAGGAGCTCG CCACCACTGA TCCGCTGACC
GGGCTCACCA ACCGTCGCAA GTTCGACGCG GCGATCGACA CCGAATGGCG CCGCGCCATC
CGGCAGAACA CGCCGATCGC GCTCCTGATG ATCGATGCCG ATCACTTCAA GGCTTACAAC
GACAGTTTTG GTCATCAGGC CGGCGACCAG ATGCTGGTCG GCATCGCGGT GTGCATCGCC
GACACTGTGC ACCGCGCCGG CGATTGCGTC GCCCGGTTCG GCGGCGAGGA GTTTGCCGTG
CTGCTGCCGG GCCTCACCGC GCCGGCCGCC GAAGCCATCG CCGAGACCAT CCGGCGCAAA
GTCGAGGAAT GGTCGGATAT CGAGGGCGGC GTCACCGTGT CGATCGGCGT CGCCAGCACC
ACGCCGATCG CCGCGCATCA ATGGTACGAT CTGGTCGAAG CCGCCGATCG CGCGCTGTAT
GCGGCCAAGG AACTCGGCCG CAACCGCTGC GTCGTCGCCG TGCGCGGCGA GGTCACACTG
GTGGCGTAA
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| Protein sequence | MDTHGLFNKI SKELHRRRRM SARVMVAFSL VTVLGFSAVC GSVLLDMRRG AEELARQTLE
NLAASMDADI NRNVELYDAS LRAVASNLVL PELSQVDAKL ARLILFDHPV TGPHFGAIRV
YDEHGNLTGD SALTNPQKEN RASEPFFTVQ RNEPYVGLYI SKPQQVDGHY SVILSRRVTG
SDGRFLGVVA GSIKFDYFQD LFKRLRLRPQ DMIAVIAHDG TLIVRTPFEP ELIGKNMLVT
SGVQKMFGRR NGWFAGTGTL DGVKRMFVWS DSTKPLVVLV AKSWNDIYAM WRKEATWIGI
VLLALAAFVA AVTVFFIREI ERRAAAERRL EELATTDPLT GLTNRRKFDA AIDTEWRRAI
RQNTPIALLM IDADHFKAYN DSFGHQAGDQ MLVGIAVCIA DTVHRAGDCV ARFGGEEFAV
LLPGLTAPAA EAIAETIRRK VEEWSDIEGG VTVSIGVAST TPIAAHQWYD LVEAADRALY
AAKELGRNRC VVAVRGEVTL VA
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