Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0900 |
Symbol | |
ID | 6408554 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 958773 |
End bp | 960398 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642710814 |
Product | cytochrome c oxidase, subunit I |
Protein accession | YP_001989933 |
Protein GI | 192289328 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0552276 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAATGG AAGCTGCAAG GGTCGCCCAT TCCGAACACG CGCACGACGA TCACGCGCAT GCGCATCCGA CCGGATGGCG ACGCTATCTG TACTCGACCA ACCACAAGGA CATCGGCACC ATGTATCTGG TGTTCGCCGT GATGGCGGGC GTCATCGGTG CGGCGATGTC GATCGCGATC CGGGTCGAGT TGATGTTCCC CGGCATTCAG ATCTTTCACA ACACCCACAC CTACAACGTC TTCGTCACCT CGCACGGCCT GATCATGATC TTCTTCATGG TGATGCCGGC GATGATCGGC GGGTTCGGCA ACTGGTTCGT GCCGCTGATG ATCGGCGCGC CGGACATGGC GTTCCCGCGG ATGAACAACA TCTCGTTCTG GCTGCTGCCG GCCGCGTTCG CGCTGCTGAT CATCTCCACC TTCGTGGAGG GCGAGCCGTC GTCGAACGGC GTCGGCGCCG GCTGGACGAT GTATGCGCCG CTATCGACCA TCGGGCATCC CGGACCCGCC GTGGACTTCG CGATCTTGGC GCTACATTTG GCCGGTGCAT CGTCGATCCT CGGCGCGATC AACTTCATCA CCACCATCTT CAACATGCGG GCGCCGGGCA TGACCCTGCA CAAGATGCCG CTGTTCGTGT GGTCGGTGCT GATCACCGCG TTCCTGCTGC TTCTGTCGCT GCCGGTGCTT GCTGGTGCCA TCACCATGCT GCTGACCGAC CGCAACTTCG GCACCACCTT CTTCTCGGCC GAAGGCGGCG GCGATCCGCT GCTGTTCCAG CACCTGTTCT GGTTCTTCGG TCATCCCGAA GTCTACATCC TGATCCTGCC GGGTTTCGGC ATGATCAGCC AGATCGTGTC GACCTTCTCC AAGAAGCCGG TGTTCGGCTA TCTCGGTATG GCCTACGCGA TGGTGGCGAT CGGCGTGATC GGCTTCGTGG TGTGGGCGCA CCACATGTAC ACCGTCGGCA TGTCGAGCAC GACGCAGGCA TATTTCGTCG CCGCCACCAT GGTGATCGCG GTGCCGACCG GCGTGAAGGT GTTCTCCTGG ATCGCCACGA TGTGGGGCGG CTCGATCGAA TTCAAGACGC CGATGCTGTG GGCGGTGGGG TTCATCTTCC TGTTCACCGT CGGCGGCGTC ACCGGCGTGG TGCTGGCCAA TGCCGGCGTC GACCGGGTGC TGCAGGACAC CTACTACGTC GTCGCGCACT TCCATTACGT GCTGTCGCTC GGCGCCGTCT TCGCGATTTT CGCGGGCTGG TACTACTGGT TCCCGAAGAT GACCGGCTAC ATGTACAACG AGACCATCGG CAAGCTGCAC TTCTGGCTCA CCTTTATCGG CGTCAACATG GTGTTCTTCC CGCAGCACTT CCTCGGTCTG TCGGGGATGC CGCGGCGCTA CGTCGATTAC CCGGATGCGT TCGCCGGCTG GAATCTGGTG TCTTCGATCG GCTCCTATAT CTCCGGCTTC GCCGTGCTGG TCTTCCTGTA CGGAATGACG CTCGCCTTCA TCCGCAAGGA GCGCGCGGCG GACAATCCGT GGGGCGCCGG CGCCACCACG CTGGAGTGGA CGCTGTCGTC GCCGCCGCCT TTCCATCAGT TCGAGGTGCT GCCGCAGGTG CGCTGA
|
Protein sequence | MAMEAARVAH SEHAHDDHAH AHPTGWRRYL YSTNHKDIGT MYLVFAVMAG VIGAAMSIAI RVELMFPGIQ IFHNTHTYNV FVTSHGLIMI FFMVMPAMIG GFGNWFVPLM IGAPDMAFPR MNNISFWLLP AAFALLIIST FVEGEPSSNG VGAGWTMYAP LSTIGHPGPA VDFAILALHL AGASSILGAI NFITTIFNMR APGMTLHKMP LFVWSVLITA FLLLLSLPVL AGAITMLLTD RNFGTTFFSA EGGGDPLLFQ HLFWFFGHPE VYILILPGFG MISQIVSTFS KKPVFGYLGM AYAMVAIGVI GFVVWAHHMY TVGMSSTTQA YFVAATMVIA VPTGVKVFSW IATMWGGSIE FKTPMLWAVG FIFLFTVGGV TGVVLANAGV DRVLQDTYYV VAHFHYVLSL GAVFAIFAGW YYWFPKMTGY MYNETIGKLH FWLTFIGVNM VFFPQHFLGL SGMPRRYVDY PDAFAGWNLV SSIGSYISGF AVLVFLYGMT LAFIRKERAA DNPWGAGATT LEWTLSSPPP FHQFEVLPQV R
|
| |