| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0887 |
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| Symbol | |
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| ID | 6408541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 946609 |
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| End bp | 948825 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642710801 |
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| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
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| Protein accession | YP_001989920 |
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| Protein GI | 192289315 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.703103 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTTCA AGAACTTCAA AGTCGAGACC GACGCCGACG GCATCGCACT GGTGACCTGG
GACCTGCCCG GCAAGTCGAT GAACGTGCTG GACGCTGCAA CGATCGAGGA ACTCGGTGCG
ATCGCGGAAG CCACCACCAA GGACACGGCG GTCAAGGGCG TGGTGATCAC CTCGGCCAAG
GACGCGTTTT GCGCCGGCGC CGATCTGTCG ATGCTGGAAA GCATGAACCA GCAGTTCGCC
CAGATCCGGA AAGACAAGGG TGAAGAAGCC GCCCAGAAGA TGCTGTTCGA CGAGAGCCGC
AAGCTGTCGC AGATCCTGCG CGGCATCGAG ACCTGCGGTA AGCCGTGGGT CGCGGCGATC
AATGGACTGG CGCTTGGCGG CGGCTTCGAA GTCACGCTGG CCTGCCACTA TCGCGTCGCA
GCCGACAATC CGAAGACCCG GCTCGGCCTG CCCGAGATCA AGGTCGGCCT GTTCCCGGGC
GGCGGCGGTA CCCAGCGGAT TCCGCGCATC GTCGATCCGC AGAGCGCGAT GACGATCCTG
CTCAAGGGCG ATCAGATCAA GCTCGACAAG GCCAAGGCGC TGAAGCTGGT CGACGCGGTG
GTGCCGGCGG CCGATCTGAT CAAGACTGCC AAGGACTGGA TCAAGAACGG CGGCAAGGCG
GTGGCGCTGT GGGACGAGAA GGGCTTCAAG CTGCCCGGCG GCCAGGTGTT CTCCAAGCAG
GGCATGATGA TGTTCCCGGC CGGCAACGCC ATCTATCGCC GCGAGACCTA CGACAACTAT
CCGGCCGCGC GCGCGATCAT GAGCTGCGTC TATGAGGGCC TGTTGGTGCC GATCGACGTC
GCGCTGCGGA TCGAGTCGCG CTACTTCGCG CACGTGCTGC AGACCAAGGA AGCGGCGGCG
ATGATCCGCA GCCTGTTCCT GTCGATGCAG GAGCTGAACA AGGGCGCGCG CCGTCCGCAG
GGTGTGCCGC CCACCAAGGT CAAGAAGCTC GCCATCATCG GCGCTGGCTT CATGGGCGCC
AGCGTCGGCT ACGTCTCGGC CAAGGCCGGC ATCGAGGTGG TGCTGATCGA TCGCGACCAG
GAGAGCGCCG ACAAGGGCAA GGCACATTGC CAGTCGGTCA TCGACGGTCT CATCAAGAAA
GGCCGCGCCA AGGAAGCCGA CCGCGACGCG CTGATGTCGC GCATCACTGC GACGCCGGAC
TTCAATGCAA TCTCGGATTG CGACCTCGTC ATCGAAGCGG TGTTCGAGGA TCGGAAAGTG
AAGGCCGAGA CCTACGCCAA GGCCCAGCCG CTGCTCAAGG AAGGCGCGAT CTTCGCGTCG
AACACCTCGA CGCTGCCGAT CAATTCGCTG GCCGAGGAGT TCAAGGACCA GTCGAAGTTC
ATCGGCATCC ACTTCTTCTC GCCGGTCGAG AAGATGATGC TGGTCGAAGT GATCCTCGGC
AACAACACCA GCGACGTCAC GCTGGCGACC GCGCTCGACT ACACCCGCCA GATCGGCAAG
ACCCCGATCG TGGTGAACGA CAGCCGCGGC TTCTTCGCCA ACCGCTGCGT GCTGCGCTTC
ACCGCCGAGG GCCTTGAGAT GCTGATGGAA GGCGTCCCGG CGCCGATGAT CGAGACCGCG
GCCAAGATGG CCGGCATGCC GGTCGGCCCG CTGTCGCTGG CCGACGAAGT GGCGCTCGAT
CTGATCCTGA AGATCATGAA GGCGACCGAA GCGGATCTCG GCGAACAGGC GGTCGATCAG
CAGCAGAAGA AGCTGATGGT CGAGCTGGTC GAGAAGCAGG GCAGGTTCGG CCGCAAGAAC
GCCAAGGGCT TCTACGTCTA TCCGGAGAAG GGCAAGGGGC AGAAGAGCCT GTGGGACGGC
ATCGCCGCGC TGCAGCCGAA GCACCTCGAT CCCGATACGA TCGATGTCGA AGAGCTGAAG
CAGCGCTTCC TGGCTGTGCA GGCGGTGGAA GCGGCCCGCA CGGTCGAGGA CAACGTCATC
GTCGACCCGC GCGAGGCCGA TGTTGGCTCG ATCCTCGGCT TCGGCTTCGC GCCGTTCACC
GGCGGCACGT TGAGCTACAT CGACTTCATG GGCACCAAGG AGTTCGTGGC GCTGTGCCAC
AAGCTCGAGG GCAAATACGG CTCGCGCTTC ACTCCGCCGA AGCTGCTCGA AGACATGGCC
AAGACCGGCG ATACCTTCTA CCACCGCTTC GCCCCGAAGA AGCAGGCGGC GGCGTAG
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| Protein sequence | MAFKNFKVET DADGIALVTW DLPGKSMNVL DAATIEELGA IAEATTKDTA VKGVVITSAK
DAFCAGADLS MLESMNQQFA QIRKDKGEEA AQKMLFDESR KLSQILRGIE TCGKPWVAAI
NGLALGGGFE VTLACHYRVA ADNPKTRLGL PEIKVGLFPG GGGTQRIPRI VDPQSAMTIL
LKGDQIKLDK AKALKLVDAV VPAADLIKTA KDWIKNGGKA VALWDEKGFK LPGGQVFSKQ
GMMMFPAGNA IYRRETYDNY PAARAIMSCV YEGLLVPIDV ALRIESRYFA HVLQTKEAAA
MIRSLFLSMQ ELNKGARRPQ GVPPTKVKKL AIIGAGFMGA SVGYVSAKAG IEVVLIDRDQ
ESADKGKAHC QSVIDGLIKK GRAKEADRDA LMSRITATPD FNAISDCDLV IEAVFEDRKV
KAETYAKAQP LLKEGAIFAS NTSTLPINSL AEEFKDQSKF IGIHFFSPVE KMMLVEVILG
NNTSDVTLAT ALDYTRQIGK TPIVVNDSRG FFANRCVLRF TAEGLEMLME GVPAPMIETA
AKMAGMPVGP LSLADEVALD LILKIMKATE ADLGEQAVDQ QQKKLMVELV EKQGRFGRKN
AKGFYVYPEK GKGQKSLWDG IAALQPKHLD PDTIDVEELK QRFLAVQAVE AARTVEDNVI
VDPREADVGS ILGFGFAPFT GGTLSYIDFM GTKEFVALCH KLEGKYGSRF TPPKLLEDMA
KTGDTFYHRF APKKQAAA
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