| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0882 |
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| Symbol | |
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| ID | 6408536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 938359 |
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| End bp | 941691 |
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| Gene Length | 3333 bp |
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| Protein Length | 1110 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 642710796 |
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| Product | Sel1 domain protein repeat-containing protein |
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| Protein accession | YP_001989915 |
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| Protein GI | 192289310 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.574847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGCG TGTCGTGGAG TGTCGAGGAG ATCGAGCCGT CAGTGCGCGA GAAGGCCGAG
GCCGCCGCAA AGCGCGCCGG GCTGTCGCTC ACCGACTGGA TCAATGCTCA GCTCGGCGAG
GCTGCCCCGC AGCAGCCGGC CACCGAACAA CTGCGCATGC CCGGCCGTCC GGCGATGCCC
GAGCGCAGCG CCACCGAAGT CGCTGAAATC CATCAGCGGC TCGACGCCAT CGCCCGCCAG
ATCGATCATA TTTCCCGCGC CCCGGCGCGC AGCGAACCGC CGGTCGCCCG GCAGCTGAAT
GACGCGATTT CCCGGCTCGA CGCCCGCTTG GCGCGGATCA CCGAGCCGAA GCCCGCGGCG
GCTCGGCCTG CTGAGGCCGC AGCGGTGCCG CAGACGCCCA CCGACCGGGT CGAACGCGCC
GCTGCGCAGG TTTACCCGTC CCCGACGCTC GACCCGAACG CGCTCGACAA GGCGATTGCC
GAGATCGCCG CGCGGCAGAG CGAACTCGAT GCCAGCATCG GCCGGATGCC GCGCCAGCCG
GCGTCGTTTG CTCCGCCGAT CGCGCACGCG ATGGCTCCGC CGCCCCCGCA GGCCGGACCG
GACTTCACCA GCCTGGAGAA GCAGCTCCAC AAGATCACCA GCCAGATCGA CGCGCTGCAG
CGCTCCGACA AGGTCGAGCA CTCGATCGCG GCGTTCCGCG CCGACCTGGC CGAGATCCGC
CAGACCATCA CCGAAGCGAT GCCGCGCAAG GCGATCGAAA CGCTGGAAGG CGAGATCCGC
TCGCTGGCGC AGCGTCTCGA CGAAAGCCGC GCCAATGGCA GCAACAGCGA AGTCATCGTC
GGCATCGAAC GCGCACTTGG CGAGATCCAC GCCGCGTTGC GCTCGCTGAC GCCGGCCGAG
CAGCTCGCCG GCTTCGACGA AGCGATCCGC AATCTCGGCG GCAAGATCGA CATGATCGTT
CGCAACAGCG ACGATCCCGG CACGGTGCAG CAGCTCGAAA ACGCCATCGG CGCGCTGCGC
GGCATCGTCT CCAATGTCGC CTCGAATGAA GCGCTGGGGC AGCTCAGCGC CAACGTCCAC
GCGCTCGGCG AGAAGATCGA GCAGCTGGCG CAGGCCGACA ACCATAGCAT TTCGTTCGCC
GCCCTGGAGC AGCGCATCTC GGCGCTGACC GCGGCGTTGG AAAGCCGCGA GCGCCCTGCG
CCGAGCGAAT CCACCGAGCA GCTCGAAAGC GCCGTGCGGA CACTGTCCGA GCGGATCGAC
CATCTGCCGA TCGGCAACGA TAATCAGTCC GCCTTCGCGC ATCTCGAACA GCGCGTCGCG
CATCTGCTGG AGCGGATGGA AGCCGCAACC GAGCAGCGCG GCGGCAGTGC CAATCTCGGC
CGCGTCGAGG AAGGCCTGCA CGACATCCTG CGGATGCTCG AGCGGCAGCA GTCGCAATTT
GACGTGCTGG CTGACATCGA CCGTCGGCCG GCACCGGCGC TGGATCCGAG CTTCGTCGAC
ACCATCAAGC GCGAACTTTC CGACATGCGC TTCAGCCAGT CGGAAACCGA TCGTCACACC
CAGGATTCGC TCGAGGCGGT GCACAACACC CTCGGCCACG TCGTCGACCG GCTGGCGATG
ATCGAAGGCG ATCTGCGCAC CGCGCGCGCA ACGCCTCCGC TGGCCCCGCC GCCGGCCCCC
GCTCCGGCGC CCGAACAGGC GAAGCCCGCC TTCCTGGCCG CGGCGCCGAT CGCGCCGGCA
CCGGCTGCTG CCGCGGCCGC GCCTGTCCCG CCGCAGCCTC AGCCGGAGAT GGCCAATCCG
GCCGCCGAGC CGTTCGCAGC CGCGCCGCGC GAATTTGCTG CCGCCAAACC CGCCGTCGAG
CCGCCGGCGC CGGCGCCCGA ACCGCGTGGG CCGCGGGCTT TCCACGACAT CCACGAGTCC
GCCGCGGGCC CGCGTCAGCC GCAGAAGATC GAGCCGGTCG TTGCTGTGCC GCAGCCGGCG
CGCCGGGAAG CCACGCTGCC GCCGGACCAT CCGCTCGAGC CCGGCACCAA GCCGCCGGCC
CGGGTCGCTT CGCCGTCGGA ACGGATCGCC GCGTCCGAAA ACGCGCTCGG CGAAATCGCT
CCGGCGCAGC CGGAGCCGGC CAACGCCACC AGCTTCATCG CGGCCGCGCG CCGCGCCGCA
CAGGCGGCGG CGTCCGCCAG CGCCGGCAAG GCCAAGCCCG GCAAGCCGAA GACCGATGGC
GACAAGCCCG ATCCGGACGG CGGCACCCCG GGCTCGCCGC TCGGCTCCAA GATCAAGTCG
CTGCTGGTCG GCGCCAGCGT GGTGGTGATC GTGCTGTCGA GCTTCCAGAT GGCGATGAAA
CTGTTCGACA GCGGCGAAGC GCCGCCGGTC GCCAGCGTCA CCGCGCCGAA GCTGAGCCCG
GCGCCGGACA AACAGCGCCT ACCTGCGGAC GAGCGGCAAT CTGATCCGAC CGAGCCCACC
GCGCCGCCGT CTGTGGCGCC GGTGGCTCCG CCGCCGTCGA TGATTTCGCC GACTCCGGTC
GAGCGTCAGT CGCTGTACAC CCCGCCAGCC CCGCCGCAGA CCGAGCCGGC CGCGCCCAGC
GACATCACCG GCACGATCCC GTCGCAGCCG AGCGCGGCGC CGGAGAAGTT CGGCACCGTC
GCGATTCCGT CCGCCGAACG GCTGCCCGAC ACCATCGGCG GCGCGACGCT ACGTACCCTC
GCGCTCAAGG GCGATGCCGC CGCCGCTTAC GAAGTCGCCA CCCGCTACGT CGAAGGCAAG
GGCGTGCCGG TGAACTACGA CGAAGCCGCC AAATGGTATC AGCGCGCAGC GGATGCCGGC
GTGACACCGG CGATCTTCCG GATCGGCACG CTGTACGAGA AGGGTCTCGG CGTGAAGCGC
GACCTCGACG TCGCGCGGAC GCTGTATTCG ACCGCGGCCG ATCGCGGCAA CGCCAAGGCG
ATGCACAATC TGGCCGTGCT GTACGCCGAC GGCGGCAGCA AGGGCGCGAA CTACAAGACC
GCCGCGGCCT GGTTCCGCAA GGCCGCCGAG CGCGGCGTTG CCGACAGCCA GTTCAACCTC
GGCATCCTGT ATGCCCGCGG CATCGGCGTC GATCAGAACC TCGCCGAGTC GTACAAGTGG
TTCTCTCTCG CCGCCGCTCA GGGCGATGAG GATGCGGGCC GCAAGCGCGA CGACGTCGCC
AAGCGCCTCG ACCCGCAGTC GCTGGCAGCC GCCAAGCTCG CGATCCAGAC CTTCACGGCC
GAGCCGCAGC CCGACGCCGC CGTCAAGGTC GCGGCGCCCG CCGGAGGCTG GGACGGGCAG
CCGGCCGCTG CGGCCAAGCG CGCCGCCCGC TAA
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| Protein sequence | MNRVSWSVEE IEPSVREKAE AAAKRAGLSL TDWINAQLGE AAPQQPATEQ LRMPGRPAMP
ERSATEVAEI HQRLDAIARQ IDHISRAPAR SEPPVARQLN DAISRLDARL ARITEPKPAA
ARPAEAAAVP QTPTDRVERA AAQVYPSPTL DPNALDKAIA EIAARQSELD ASIGRMPRQP
ASFAPPIAHA MAPPPPQAGP DFTSLEKQLH KITSQIDALQ RSDKVEHSIA AFRADLAEIR
QTITEAMPRK AIETLEGEIR SLAQRLDESR ANGSNSEVIV GIERALGEIH AALRSLTPAE
QLAGFDEAIR NLGGKIDMIV RNSDDPGTVQ QLENAIGALR GIVSNVASNE ALGQLSANVH
ALGEKIEQLA QADNHSISFA ALEQRISALT AALESRERPA PSESTEQLES AVRTLSERID
HLPIGNDNQS AFAHLEQRVA HLLERMEAAT EQRGGSANLG RVEEGLHDIL RMLERQQSQF
DVLADIDRRP APALDPSFVD TIKRELSDMR FSQSETDRHT QDSLEAVHNT LGHVVDRLAM
IEGDLRTARA TPPLAPPPAP APAPEQAKPA FLAAAPIAPA PAAAAAAPVP PQPQPEMANP
AAEPFAAAPR EFAAAKPAVE PPAPAPEPRG PRAFHDIHES AAGPRQPQKI EPVVAVPQPA
RREATLPPDH PLEPGTKPPA RVASPSERIA ASENALGEIA PAQPEPANAT SFIAAARRAA
QAAASASAGK AKPGKPKTDG DKPDPDGGTP GSPLGSKIKS LLVGASVVVI VLSSFQMAMK
LFDSGEAPPV ASVTAPKLSP APDKQRLPAD ERQSDPTEPT APPSVAPVAP PPSMISPTPV
ERQSLYTPPA PPQTEPAAPS DITGTIPSQP SAAPEKFGTV AIPSAERLPD TIGGATLRTL
ALKGDAAAAY EVATRYVEGK GVPVNYDEAA KWYQRAADAG VTPAIFRIGT LYEKGLGVKR
DLDVARTLYS TAADRGNAKA MHNLAVLYAD GGSKGANYKT AAAWFRKAAE RGVADSQFNL
GILYARGIGV DQNLAESYKW FSLAAAQGDE DAGRKRDDVA KRLDPQSLAA AKLAIQTFTA
EPQPDAAVKV AAPAGGWDGQ PAAAAKRAAR
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