| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0881 |
|---|
| Symbol | |
|---|
| ID | 6408535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 937160 |
|---|
| End bp | 938122 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642710795 |
|---|
| Product | protein of unknown function DUF81 |
|---|
| Protein accession | YP_001989914 |
|---|
| Protein GI | 192289309 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTCGT CACAGCGAGA ACTCCGAAGC GAACCGCGCG TGCAGCTCTA TCTCCCGATC
GCCGATCTTC CGGTCAACGT CCTGCTCGTG CTGGCGATGG GCGCTGCGGT CGGGTTCGTG
TCCGGAATGT TCGGCGTCGG CGGCGGATTC CTGATGACGC CGCTGCTGAT CTTCATCGGC
ATCTCGCCCG CGGTCGCGGT CGCCTCGGTG ACCAGCCACA TGGCGGCGTC CTCGTTCTCC
GGTGCGCTGT CGTACTGGCG CCGCCGGGCA ATCGATCCTC TCCTCGCCTT CGTCCTGTTA
TGCGGCGGCA TCGCCGGCAC CGGGCTCGGC GTCTGGTTCT TCGTGCTGAT GCGCGCGGTC
GGCCAGCTCG ACTTGGTGAT CGCGGTGTCC TACGTCGTGC TGCTGACCTC GGTCGGCGGT
CTGATGGTTT ACGAAGGCAT CCGCGCGATC CGTCGCTCCA ACCGCGGTGA GGTGCCGCTG
GCGGGCCGCT CCGGCAACCG CAACTGGCTG TACGCGCTGC CGTTCAAGGT CCGGTTCAAG
CGCTCCAAGA TCTATCTGTC GGTGCTGCCG GTGGTGGCGA TCGGCGTGCT GATCGGCTTC
ATCGGCGCCG TGATGGGCGT CGGCGGCGGC TTCATCCTGG TTCCGATGCT GATCTATTTG
CTGCGGGTGC CGACCAGCAC CGTGGTGGGT ACCTCGATGG TGCTGACCCT GGTGACGATG
CTGATCGCCA CAGTGCTGCA TGCCGCCACC AGCCACCTGG TCGACGCGGT GCTGGCGTTG
ATCCTGATGA TCGGCGGTGT CACCGGTGCG CAGTTCGGCG CCCGCGCGGG CCAGCGCATC
CGCGGCGAAC AGCTCCGCCT GCTGCTCGGC CTGCTCGTGC TGGCGGTCGG CGTCCGCTTC
GCGATCGAGC TCGGCATCCG CCCCGCCGAG CTGTTCACGC TGCGCGAACT GAGCCCGTCA
TGA
|
|---|
| Protein sequence | MLSSQRELRS EPRVQLYLPI ADLPVNVLLV LAMGAAVGFV SGMFGVGGGF LMTPLLIFIG
ISPAVAVASV TSHMAASSFS GALSYWRRRA IDPLLAFVLL CGGIAGTGLG VWFFVLMRAV
GQLDLVIAVS YVVLLTSVGG LMVYEGIRAI RRSNRGEVPL AGRSGNRNWL YALPFKVRFK
RSKIYLSVLP VVAIGVLIGF IGAVMGVGGG FILVPMLIYL LRVPTSTVVG TSMVLTLVTM
LIATVLHAAT SHLVDAVLAL ILMIGGVTGA QFGARAGQRI RGEQLRLLLG LLVLAVGVRF
AIELGIRPAE LFTLRELSPS
|
|---|
| |