Gene Rpal_0851 details

Gene Information

• Locus tag: Rpal_0851
• ID: 6408505
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 900583
• End bp: 902400
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642710765
• Product: diguanylate cyclase/phosphodiesterase
• Protein accession: YP_001989884
• Protein GI: 192289279
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGAGCG CCGCACCATC CTCTCCCTCA ACTGTGACGA CCGACGTCGC CGAGAGCGAT 
GAGGCGCCTT CCACGGACGC GGCCGGCATC GCGGCTGCAG AAACCGGGGA CCTCCGGCTG 
TTCAAGGAAA TCGTGCGCGC GCTGCCTTCG GCCGTCACGG TCCAGGACGA GCAAGGCCGC 
TTCATCTTCA TCAACGACGC GGCCGCCGCA CAATATCGGC TTGCGCCTTC ATCGACCGAC 
GCCGCCGGCA ACCTTCCGCT CGACCGACGC CGTAGCGAGG GCGCCGCGCT GCTCGCGCAG 
GGCCAGTCCG GCACGCGCGA GGAACGCATC ACCTTCGGCG GCGCGACCCG CGCGCTGCTG 
ACCGCGCACA AGCCGATGGA TATCGCGGGG CGCAAACTGC TGCTGTCGAG CTCCCTCGAC 
GTTACCGAGC AGAAGGTGAT CGAGGACGAG CTGTTCCGCC GGGCCTATTA CGACGAGCTC 
ACCGGCCTGC CCAACCGCGC CGTGATCGAG CGCCACGTCA CCGAGCTGCT CGAGGACCAC 
CGGCCGCACC ATTTCGCGCT GGCGTTTCTC GACGTCGACA ACTTCAAGCA CATCAACGAT 
TACTACGGCC ATTCGGTGGG CGACGCCCTG CTGGTCGGCA TCGCCAAGCG GCTGTCGCTG 
GAGCTGCGCG ACACCGACGT GCTGTCGCGC ATCAGCGGCG ACGAATTCCT GCTGCTGCTC 
GATCCGATCA CCAGCGAAGC GGAAGTCGCC GAGCACATCA ACTTCCTGCT GCAGCGACTG 
AAGGCCCCGT TCTACATCGA CGGCACTGAA GTGTTCGCGT CGGCCTCGAT CGGCATTAGC 
CTGTATCCCG AGCACGGCCG CAGCTACGAG GCGCTGCGGC AGAACGCCGA CATCGCGATG 
TACCGGGTCA AGAGCGACGG CAAAGGCGCC TCGGCGATCT TCAACATTGC GATGGAGCGC 
GAGGCGTTGG AGCGGATGGC GGTGGAGCAG TCGCTGCGCC AGGCCATTCT CGACAGGCGC 
TTCTGCTGCG CATTCCAGCC CAAGGTCGAC ATCCGCACCA ACGAAATCAA AGGCGTCGAA 
GCTCTGGTGC GGCTGCGCGA CGATAACGGC GTGATTCAGG CGCCGGGCAC CTTCGTCGAT 
CTCGCGGTCG AACTCGGCCT GATCGACGAG TTGACCCATC TGGTGCTCGC CGAGATCATG 
AAATCGATCG ACCTGATCAA CGCCACCTTC GGCGAGGACG CCAGCATCAG CGTCAATGTC 
GCCGCCAAGC AGGCCGGCTC GCCGGACTTC ATGCGCTCGT TCTGCGAAGC GCTGGCCGCA 
ACCGAATGTC CGAAGCGGTT CATGGTGGAG ATCACCGAGG ACGCATTCGT CGCCAAGGCA 
CATTTTCAGA AGCAGATCCT GCCGATGCTG CGGGAGATCG GCGTCGGCAT TTCGATCGAC 
GATTTCGGCA TCGGCTACTC GTCGCTGTCG GCGCTTGCCG ATATCACCGC CGACGAGATC 
AAGATCGACC GTTCGTTCAT CACGGACATT CACAAGCGAC CGCGCAGCCA GGGCATTTTG 
CGCGCGATCG AGTCGCTCAG CGACGCACTC GGCATGACGG TGATCGCCGA AGGGCTCGAG 
ACCTTCGAAG AGCTCGCTTA CCTGCAGGCA ATGACACGTA TCCGCTACGC GCAGGGCTAC 
TACTACTCCA AGCCGATCTT CCTCGAAGAA TTGCGGCCGA CCATTCCGGT GTTCAGCGGT 
GGCCGCCCCG GCGGGCCCGG CCGTCACCTC GAACAAGCGC GTCAGCCGCT GACCCGGGCC 
ACCTACGCGC GGCGCTGA 

 

Protein sequence

MTSAAPSSPS TVTTDVAESD EAPSTDAAGI AAAETGDLRL FKEIVRALPS AVTVQDEQGR 
FIFINDAAAA QYRLAPSSTD AAGNLPLDRR RSEGAALLAQ GQSGTREERI TFGGATRALL 
TAHKPMDIAG RKLLLSSSLD VTEQKVIEDE LFRRAYYDEL TGLPNRAVIE RHVTELLEDH 
RPHHFALAFL DVDNFKHIND YYGHSVGDAL LVGIAKRLSL ELRDTDVLSR ISGDEFLLLL 
DPITSEAEVA EHINFLLQRL KAPFYIDGTE VFASASIGIS LYPEHGRSYE ALRQNADIAM 
YRVKSDGKGA SAIFNIAMER EALERMAVEQ SLRQAILDRR FCCAFQPKVD IRTNEIKGVE 
ALVRLRDDNG VIQAPGTFVD LAVELGLIDE LTHLVLAEIM KSIDLINATF GEDASISVNV 
AAKQAGSPDF MRSFCEALAA TECPKRFMVE ITEDAFVAKA HFQKQILPML REIGVGISID 
DFGIGYSSLS ALADITADEI KIDRSFITDI HKRPRSQGIL RAIESLSDAL GMTVIAEGLE 
TFEELAYLQA MTRIRYAQGY YYSKPIFLEE LRPTIPVFSG GRPGGPGRHL EQARQPLTRA 
TYARR