Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0845 |
Symbol | |
ID | 6408499 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 894270 |
End bp | 896909 |
Gene Length | 2640 bp |
Protein Length | 879 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642710759 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001989878 |
Protein GI | 192289273 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTGCGTC TTCGCCCGAT CCTCTGGCTG ATCCTGAGCG GCGCACTGCT GATTGCCGGC ATCGCGGTCA CCACCACGCT GACGGTCAGC AACTTCAAAG AGAAGGCGCT CCGCAACGGC GAGCGCGAGC TGTCCAACAC CGCATTGCTG CTGGCGCTCC ATTACGACCG CGAAATCGAC GATTTCCTGG CGATGCAGAA CGACATCGTC ACCACCGCCC GCCAGATGCA GCAGCCATCC GCAGAAGCGT TCGGCGGCAC GATGGCGACG CTGGCGATGC ATCAGACACT GCGCTCGCGG GCCAGAGGCG CAAACGAGAT CACCGCGCTG AAGATTTTCG ATGCGGGCGG CACCCTGATC AACACCTCCG ACGTGTGGCC GGTGCCGGTG CTGTCGATCG CCGATCAGCG CTACTTTTTA GACCACAAAT CCGGGATCGC GCAGCGGGTC ACCGTCGCGC TGGAGCAGAA CGCACTGGCC GGCGGCTGGA GCATCGTGCT CGCGCAGCGG CTGACCGCAG CAGACGGCGA ATTCCTCGGC GTCGTCACCC GCGCGATCAC ACCCGCGCAT TTCGACCGCT TCCTGTCGCA GGTCTCGCTG GTCGGCGAAT CTGCCGTCTC GATGCACCAC AGCGACGGCA CCTTGCTGAC ACGCCATCCC TACGCCGAGG GCATGATCGG CCGCAATTTC CGCGACGGCC CGCTCCAGCA GCAGGCGATG TTCGACGACG ACACCACCGC GCGGCTGACC AGCCCGATCG ACGGGCAGGA CCGGCTGGTG GCGTCGCACG CGCTCACCGA ACTGCCGATC GTGATGGTGG TCACCACCAC CACCGAGGAT GCGCTGGCGA GCTGGCGTAC CCAGACCAAA CTGATGGTCT CGGTCGCGGC GGTCTCGGCC TTGGTCGTGA CGGTGATCCT GCTGCTGATC ATTCATCAGA TCGGCAAGCA CCACCGCGCC ACCCAGCGCA AGCTGCAGCT CGACAAGCAA CGGCTCGACA CCGCAATCAA CAACATGTCG CAGGGGCTGC TGCTGTTCGA TGCCCAGGCC CGGCTGGTGA TCTGCAATCA GCGCTACATG GAGATGTACG GCCTGTCGCC CGACGTGGTG AAGCCCGGCT GCAGTCTTCG CGACGTGCTC GAACATCGCA AATCGACCGG TTCGCTCGGC GGCAACGTCG ATAAGATCAC CACCGATCTG ATCGATCGGC TGTCGTCGCA ACGCGTGTCG GAGATCCACA GCATCCACGA CCGCTCGATC GAGTTCTCGA GCGTGCCGGT CCCGGGCGGC GGCTGGGTCA TTACCCATGA AGACGCCACC GAGCGCAAAC GTTACGACGA GCGGATCTCC TATCTGGCGC ATTTCGACAG CCTCACCGAC CTGCCGAACC GCACCATGTT CCGACAGCGG CTCGAAAACG AACTGCAACG CGCCAGCCGC GGTGCGCCGT TCGCGCTGCT GTATATCGAT ATCGACGAGT TCAAGAGCAT CAACGATACG CTCGGCCATC CGGTCGGCGA CGAACTCTTG AAGCAGGTCG CGGTCCGTCT GCGCGATTGC GTGCGCGAGA CCGACTTCGT CGCCCGGCTC GGCGGCGACG AATTCGCCAT CATCCAGATC GGCGTCAGCG GGGCCGACGA AGCCACCGCG CTGGTCGACC GTATCTACGA GTCGATCCGT CTGCCGTATC AATGCCTCGG CCACCAGCTC TCCACCGATG CGTCGATCGG GATCGCGATC GCGCCGCGCG ACGGTGCTGA TCTGGACCAA TTGGTGAAGA ACGCCGACCT TGCGATGTAC AGCGCCAAGG CCGAAGGCCG TCGCACCTTC CGGTTCTTCG AGCCGGAGAT GGACGCGGTC GCCAAGACGC GGCGGCAACT CGAATTCGAC CTGCGCCAGG CGATCGGAGA TCGCGGTTTC GAAGTCCACT ATCAGCCGCA GGTCGATCTC AGCAGCGGCG CGATCACCGG CTGCGAGGCG CTGCTACGCT GGCGGCATCC GACCCGCGGC ATGATCTCGC CGGCCGAGTT CATTCCGATC GCCGAGGACA CCGGCCTGAT CAACGAGATC GGCGCCTGGA CGCTGGCGAC CGCCTGCTCC GAGGCCGCCA CATGGGACGC CGATATCACG CTCGCGGTGA ACATCTCGCC GGTGCAATTC CGTCAGCCGT CGCTGGCGCT GCTGGTCGCC TCCGTGCTCG GTGCGGCGGG CCTGCCGGCG GAACGGCTCG AACTCGAAGT CACCGAGGCG GTGCTGATTC ACGACGATGA CGCCGCGCTG AGCACGCTGA CCCAGCTTCG CGCCCTCGGC GTGAGGATCT CGCTCGACGA TTTCGGCACC GGCTACTCGT CGCTGAGCTA TCTGCAGCGC TTCCCGTTCG ACAAGATCAA GATCGACCGC AGCTTCATCG ACGGCATCGA CACCACCGAA GGCTCGACCG CGATCGTGCA GGCGGTCGTC AACATCGCGG CGGCGCGCCG CATGACCACC ACCGCCGAGG GCGTCGAGAC CGCGCGGCAG CGCGAGATCC TCAGCACACT CGGCTGCACC CAGATGCAGG GCTGGCTGTT CAGCCCGGCC GTCCCCGCGG CGGCGTTCCG CAAGTTGCTC AGCTCGCACC TTTCAACCTG CGCCGCCTGA
|
Protein sequence | MLRLRPILWL ILSGALLIAG IAVTTTLTVS NFKEKALRNG ERELSNTALL LALHYDREID DFLAMQNDIV TTARQMQQPS AEAFGGTMAT LAMHQTLRSR ARGANEITAL KIFDAGGTLI NTSDVWPVPV LSIADQRYFL DHKSGIAQRV TVALEQNALA GGWSIVLAQR LTAADGEFLG VVTRAITPAH FDRFLSQVSL VGESAVSMHH SDGTLLTRHP YAEGMIGRNF RDGPLQQQAM FDDDTTARLT SPIDGQDRLV ASHALTELPI VMVVTTTTED ALASWRTQTK LMVSVAAVSA LVVTVILLLI IHQIGKHHRA TQRKLQLDKQ RLDTAINNMS QGLLLFDAQA RLVICNQRYM EMYGLSPDVV KPGCSLRDVL EHRKSTGSLG GNVDKITTDL IDRLSSQRVS EIHSIHDRSI EFSSVPVPGG GWVITHEDAT ERKRYDERIS YLAHFDSLTD LPNRTMFRQR LENELQRASR GAPFALLYID IDEFKSINDT LGHPVGDELL KQVAVRLRDC VRETDFVARL GGDEFAIIQI GVSGADEATA LVDRIYESIR LPYQCLGHQL STDASIGIAI APRDGADLDQ LVKNADLAMY SAKAEGRRTF RFFEPEMDAV AKTRRQLEFD LRQAIGDRGF EVHYQPQVDL SSGAITGCEA LLRWRHPTRG MISPAEFIPI AEDTGLINEI GAWTLATACS EAATWDADIT LAVNISPVQF RQPSLALLVA SVLGAAGLPA ERLELEVTEA VLIHDDDAAL STLTQLRALG VRISLDDFGT GYSSLSYLQR FPFDKIKIDR SFIDGIDTTE GSTAIVQAVV NIAAARRMTT TAEGVETARQ REILSTLGCT QMQGWLFSPA VPAAAFRKLL SSHLSTCAA
|
| |