Gene Rpal_0845 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0845 
Symbol 
ID6408499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp894270 
End bp896909 
Gene Length2640 bp 
Protein Length879 aa 
Translation table11 
GC content65% 
IMG OID642710759 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001989878 
Protein GI192289273 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCGTC TTCGCCCGAT CCTCTGGCTG ATCCTGAGCG GCGCACTGCT GATTGCCGGC 
ATCGCGGTCA CCACCACGCT GACGGTCAGC AACTTCAAAG AGAAGGCGCT CCGCAACGGC
GAGCGCGAGC TGTCCAACAC CGCATTGCTG CTGGCGCTCC ATTACGACCG CGAAATCGAC
GATTTCCTGG CGATGCAGAA CGACATCGTC ACCACCGCCC GCCAGATGCA GCAGCCATCC
GCAGAAGCGT TCGGCGGCAC GATGGCGACG CTGGCGATGC ATCAGACACT GCGCTCGCGG
GCCAGAGGCG CAAACGAGAT CACCGCGCTG AAGATTTTCG ATGCGGGCGG CACCCTGATC
AACACCTCCG ACGTGTGGCC GGTGCCGGTG CTGTCGATCG CCGATCAGCG CTACTTTTTA
GACCACAAAT CCGGGATCGC GCAGCGGGTC ACCGTCGCGC TGGAGCAGAA CGCACTGGCC
GGCGGCTGGA GCATCGTGCT CGCGCAGCGG CTGACCGCAG CAGACGGCGA ATTCCTCGGC
GTCGTCACCC GCGCGATCAC ACCCGCGCAT TTCGACCGCT TCCTGTCGCA GGTCTCGCTG
GTCGGCGAAT CTGCCGTCTC GATGCACCAC AGCGACGGCA CCTTGCTGAC ACGCCATCCC
TACGCCGAGG GCATGATCGG CCGCAATTTC CGCGACGGCC CGCTCCAGCA GCAGGCGATG
TTCGACGACG ACACCACCGC GCGGCTGACC AGCCCGATCG ACGGGCAGGA CCGGCTGGTG
GCGTCGCACG CGCTCACCGA ACTGCCGATC GTGATGGTGG TCACCACCAC CACCGAGGAT
GCGCTGGCGA GCTGGCGTAC CCAGACCAAA CTGATGGTCT CGGTCGCGGC GGTCTCGGCC
TTGGTCGTGA CGGTGATCCT GCTGCTGATC ATTCATCAGA TCGGCAAGCA CCACCGCGCC
ACCCAGCGCA AGCTGCAGCT CGACAAGCAA CGGCTCGACA CCGCAATCAA CAACATGTCG
CAGGGGCTGC TGCTGTTCGA TGCCCAGGCC CGGCTGGTGA TCTGCAATCA GCGCTACATG
GAGATGTACG GCCTGTCGCC CGACGTGGTG AAGCCCGGCT GCAGTCTTCG CGACGTGCTC
GAACATCGCA AATCGACCGG TTCGCTCGGC GGCAACGTCG ATAAGATCAC CACCGATCTG
ATCGATCGGC TGTCGTCGCA ACGCGTGTCG GAGATCCACA GCATCCACGA CCGCTCGATC
GAGTTCTCGA GCGTGCCGGT CCCGGGCGGC GGCTGGGTCA TTACCCATGA AGACGCCACC
GAGCGCAAAC GTTACGACGA GCGGATCTCC TATCTGGCGC ATTTCGACAG CCTCACCGAC
CTGCCGAACC GCACCATGTT CCGACAGCGG CTCGAAAACG AACTGCAACG CGCCAGCCGC
GGTGCGCCGT TCGCGCTGCT GTATATCGAT ATCGACGAGT TCAAGAGCAT CAACGATACG
CTCGGCCATC CGGTCGGCGA CGAACTCTTG AAGCAGGTCG CGGTCCGTCT GCGCGATTGC
GTGCGCGAGA CCGACTTCGT CGCCCGGCTC GGCGGCGACG AATTCGCCAT CATCCAGATC
GGCGTCAGCG GGGCCGACGA AGCCACCGCG CTGGTCGACC GTATCTACGA GTCGATCCGT
CTGCCGTATC AATGCCTCGG CCACCAGCTC TCCACCGATG CGTCGATCGG GATCGCGATC
GCGCCGCGCG ACGGTGCTGA TCTGGACCAA TTGGTGAAGA ACGCCGACCT TGCGATGTAC
AGCGCCAAGG CCGAAGGCCG TCGCACCTTC CGGTTCTTCG AGCCGGAGAT GGACGCGGTC
GCCAAGACGC GGCGGCAACT CGAATTCGAC CTGCGCCAGG CGATCGGAGA TCGCGGTTTC
GAAGTCCACT ATCAGCCGCA GGTCGATCTC AGCAGCGGCG CGATCACCGG CTGCGAGGCG
CTGCTACGCT GGCGGCATCC GACCCGCGGC ATGATCTCGC CGGCCGAGTT CATTCCGATC
GCCGAGGACA CCGGCCTGAT CAACGAGATC GGCGCCTGGA CGCTGGCGAC CGCCTGCTCC
GAGGCCGCCA CATGGGACGC CGATATCACG CTCGCGGTGA ACATCTCGCC GGTGCAATTC
CGTCAGCCGT CGCTGGCGCT GCTGGTCGCC TCCGTGCTCG GTGCGGCGGG CCTGCCGGCG
GAACGGCTCG AACTCGAAGT CACCGAGGCG GTGCTGATTC ACGACGATGA CGCCGCGCTG
AGCACGCTGA CCCAGCTTCG CGCCCTCGGC GTGAGGATCT CGCTCGACGA TTTCGGCACC
GGCTACTCGT CGCTGAGCTA TCTGCAGCGC TTCCCGTTCG ACAAGATCAA GATCGACCGC
AGCTTCATCG ACGGCATCGA CACCACCGAA GGCTCGACCG CGATCGTGCA GGCGGTCGTC
AACATCGCGG CGGCGCGCCG CATGACCACC ACCGCCGAGG GCGTCGAGAC CGCGCGGCAG
CGCGAGATCC TCAGCACACT CGGCTGCACC CAGATGCAGG GCTGGCTGTT CAGCCCGGCC
GTCCCCGCGG CGGCGTTCCG CAAGTTGCTC AGCTCGCACC TTTCAACCTG CGCCGCCTGA
 
Protein sequence
MLRLRPILWL ILSGALLIAG IAVTTTLTVS NFKEKALRNG ERELSNTALL LALHYDREID 
DFLAMQNDIV TTARQMQQPS AEAFGGTMAT LAMHQTLRSR ARGANEITAL KIFDAGGTLI
NTSDVWPVPV LSIADQRYFL DHKSGIAQRV TVALEQNALA GGWSIVLAQR LTAADGEFLG
VVTRAITPAH FDRFLSQVSL VGESAVSMHH SDGTLLTRHP YAEGMIGRNF RDGPLQQQAM
FDDDTTARLT SPIDGQDRLV ASHALTELPI VMVVTTTTED ALASWRTQTK LMVSVAAVSA
LVVTVILLLI IHQIGKHHRA TQRKLQLDKQ RLDTAINNMS QGLLLFDAQA RLVICNQRYM
EMYGLSPDVV KPGCSLRDVL EHRKSTGSLG GNVDKITTDL IDRLSSQRVS EIHSIHDRSI
EFSSVPVPGG GWVITHEDAT ERKRYDERIS YLAHFDSLTD LPNRTMFRQR LENELQRASR
GAPFALLYID IDEFKSINDT LGHPVGDELL KQVAVRLRDC VRETDFVARL GGDEFAIIQI
GVSGADEATA LVDRIYESIR LPYQCLGHQL STDASIGIAI APRDGADLDQ LVKNADLAMY
SAKAEGRRTF RFFEPEMDAV AKTRRQLEFD LRQAIGDRGF EVHYQPQVDL SSGAITGCEA
LLRWRHPTRG MISPAEFIPI AEDTGLINEI GAWTLATACS EAATWDADIT LAVNISPVQF
RQPSLALLVA SVLGAAGLPA ERLELEVTEA VLIHDDDAAL STLTQLRALG VRISLDDFGT
GYSSLSYLQR FPFDKIKIDR SFIDGIDTTE GSTAIVQAVV NIAAARRMTT TAEGVETARQ
REILSTLGCT QMQGWLFSPA VPAAAFRKLL SSHLSTCAA