| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0838 |
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| Symbol | |
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| ID | 6408491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 886078 |
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| End bp | 887019 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710751 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001989871 |
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| Protein GI | 192289266 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGGAAG ACTCTGTCGC CTCGCTTTTG TCGGACGAGG CTCGCGCACG TCTCTATGAT
CAGGCCCTGA CCGCCGCTGG GATCGGCGCC TGGGAGTGCG ACCTCGCAAC CGAGCGCCTG
AACTGGACCT CCGCCGTCTA TGGTCTATTC GGCTATCCGA TCGGCAACCC GCTGCGGCGC
GCCAGCATCG TCGATCTCTA TGTCGACGAA TCCCGGCGCC ACATGGAGCT CGCCCGCGCG
GAGGTGATCC AGAGCGGACG CCCGGTCACG CTGGAGACCG AGATCCGCAC CTGGCACGGC
GAAATGCGCT GGATGCGGCT GTCGATCAAC GCGCTGCGCG AGGGCGGCCG CCCGGTGCGG
ATCTTCGGCT GCAAACAGGA CGTCACATCC GACCGGCTCG CGATCGAGCA CCTCCGGCAG
CAGGCCGAAA CCGATCCGCT CACCGGCCTC GCCAATCGCG CCCGCTTCCA GGAGCGCTAT
CGCGAGGTGG TGAGCGACCG CCTGCATCAT GGCTTCGCCT CCGCGCTGGT GCTGATCGAT
CTCGATGGCT TCAAGGAGCT CAACGATACG CTCGGCCATC TCGCCGGTGA CGCGTGCCTG
TGCGAAGTGG CCCAGCGCCT GCGCCGCGCC TTCAATAGCG CCGGCCTGAT CAGCCGTCTC
GGCGGCGACG AATTCGCCAT CATCCTGCGG ACGCCGACTA GCGCCGAGCG GATTGCCGAC
GTGCTGCGGC GAACCATCGT GATGTTGAGC CGCCCGCTGT TCTGGAACGG CCATCGCATC
AAAGTCAGCG CCTCGATCGG CGCCGCCCTG ATCGGCCGCC CTCACCAGCG GCGGATCGCC
GACCTGTTCG CCGAAGCCGA CCTCGCGCTG TATCAAGCCA AAGCTGCAGG GCGAAATCGC
GTGAGCCTGA TCGGGGATCA AGCGCAGAGC AGGGCGGCGT AG
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| Protein sequence | MREDSVASLL SDEARARLYD QALTAAGIGA WECDLATERL NWTSAVYGLF GYPIGNPLRR
ASIVDLYVDE SRRHMELARA EVIQSGRPVT LETEIRTWHG EMRWMRLSIN ALREGGRPVR
IFGCKQDVTS DRLAIEHLRQ QAETDPLTGL ANRARFQERY REVVSDRLHH GFASALVLID
LDGFKELNDT LGHLAGDACL CEVAQRLRRA FNSAGLISRL GGDEFAIILR TPTSAERIAD
VLRRTIVMLS RPLFWNGHRI KVSASIGAAL IGRPHQRRIA DLFAEADLAL YQAKAAGRNR
VSLIGDQAQS RAA
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