Gene Rpal_0827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0827 
Symbol 
ID6408480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp872858 
End bp874270 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content69% 
IMG OID642710740 
ProductAmidase 
Protein accessionYP_001989860 
Protein GI192289255 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0223449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCTCG GCAATCCCGC GCTGCTGACG CTGACCGAAG TTGCCGAGGC GATCGCGTCC 
AAGAAACTGT CGTCACGTGA AGTTACCCAA GCCTGCCTCG ATCGTATCGC GCGTGCGCAA
CCGAAGCTCA ACGCCTTCAT GGCGATCGAG CCTGAGAGCG CACTCGCCGC AGCGGATGCG
GCCGACACTG CACTGGCCAA GGGCGAGCGC AAAGGCCCGC TGCACGGCGT GCCGCTGGCC
CACAAGGACA TGTATTACGA GACCGGCTTC GCGGTGACCT GCGGCTCCAA GATCCGCCGC
GACTTCGTCG CTCCCACCAC CTCGACCGCG CTGCAACGAC TGAAGGACGC CGGCCAGGTT
CGGCTCGGCA CTCTGCAGAT GTCCGAATTC GCCTACGGCC CCACCGGCCA CAACGCGCAT
TACGGCGCGG TGCGCAATCC GTGGGGCCTC GACCACATCA CCGGCGGCTC GTCGTCCGGT
TCCGGCTCGG CAGTCGCCGC GCGGCTGACG TTTGCGGCGC TCGGCTCCGA CACCGGCGGG
TCGATCCGGA TGCCGGCGCA TTTCTGCGGC GTCACCGGGC TGAAGACCAC CGTCGGGCTG
GTCAGCCGCG CCGGCGCGAT GCCGCTGTCG CATTCGCTCG ACACCGTCGG GCCGCTGGCC
CGCACCGCGG AGGACTGCGC GCTGCTCACC GGTCTGATGG CCGGCGCCGA TCCCGCCGAT
CCGACCGCGT CGCATCGCCC GGTGCCGGAC TATCTGGCCG CCACCAGACA ACCGCTGCAG
GGCATCAGCA TCGGCATTCC GAAATCATTC TATGTCGACG ATCTCGATCC AGAGGTGGCG
CGCGTGCTCG GCGACACCAA GTCGGCGCTG GCGCGCGAAG GCGTCCGCGT CGTCGAAGTC
GAACTGCCGG ATCAGCGCCA GCTCAGCGCG GCCGCACAGC TCGTGCTCGC GGTCGAAGCC
GCCGGCTTCC ACGGCCAGTG GATGCGCGAG CGGCCGCAGG ATTACGGCCC GCAGGTGCTG
ATGCGGCTGC AGAACGCGCT GGCAATTCCG GCCGTCACCT ATCTCGAAGC GATGCGCTGG
CGCGGCGTGG CGCTCGCCGA GTTCGTCGCG GCCGTGGCCG GCGTCGATGC GGTGCTGGCG
CCGGTGTCGC CGGTGCCAGC GCCGACGATT GCAGAAAGCG ACGTCGGCAA CAGCCTGAAC
GCCGAAGCTG TGATCCAGCG GCTGACCCGC TTCACCCGGC CGATCAACTA TCTCGGCCTG
CCGTCGCTGG CGCTGCCCTG CGGCTTCTCG AACGCCGGCC TGCCGATCGG CCTGCAACTG
ATCGGCCGCC CGTTCGACGA AGCGACGCTG CTGCGGATCG GCGCAGGCTG GCAGCGCGCC
ACCGACTTCC ATCGGCAATG CCCGGAGCTG TAG
 
Protein sequence
MSLGNPALLT LTEVAEAIAS KKLSSREVTQ ACLDRIARAQ PKLNAFMAIE PESALAAADA 
ADTALAKGER KGPLHGVPLA HKDMYYETGF AVTCGSKIRR DFVAPTTSTA LQRLKDAGQV
RLGTLQMSEF AYGPTGHNAH YGAVRNPWGL DHITGGSSSG SGSAVAARLT FAALGSDTGG
SIRMPAHFCG VTGLKTTVGL VSRAGAMPLS HSLDTVGPLA RTAEDCALLT GLMAGADPAD
PTASHRPVPD YLAATRQPLQ GISIGIPKSF YVDDLDPEVA RVLGDTKSAL AREGVRVVEV
ELPDQRQLSA AAQLVLAVEA AGFHGQWMRE RPQDYGPQVL MRLQNALAIP AVTYLEAMRW
RGVALAEFVA AVAGVDAVLA PVSPVPAPTI AESDVGNSLN AEAVIQRLTR FTRPINYLGL
PSLALPCGFS NAGLPIGLQL IGRPFDEATL LRIGAGWQRA TDFHRQCPEL