Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0827 |
Symbol | |
ID | 6408480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 872858 |
End bp | 874270 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642710740 |
Product | Amidase |
Protein accession | YP_001989860 |
Protein GI | 192289255 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0223449 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCCTCG GCAATCCCGC GCTGCTGACG CTGACCGAAG TTGCCGAGGC GATCGCGTCC AAGAAACTGT CGTCACGTGA AGTTACCCAA GCCTGCCTCG ATCGTATCGC GCGTGCGCAA CCGAAGCTCA ACGCCTTCAT GGCGATCGAG CCTGAGAGCG CACTCGCCGC AGCGGATGCG GCCGACACTG CACTGGCCAA GGGCGAGCGC AAAGGCCCGC TGCACGGCGT GCCGCTGGCC CACAAGGACA TGTATTACGA GACCGGCTTC GCGGTGACCT GCGGCTCCAA GATCCGCCGC GACTTCGTCG CTCCCACCAC CTCGACCGCG CTGCAACGAC TGAAGGACGC CGGCCAGGTT CGGCTCGGCA CTCTGCAGAT GTCCGAATTC GCCTACGGCC CCACCGGCCA CAACGCGCAT TACGGCGCGG TGCGCAATCC GTGGGGCCTC GACCACATCA CCGGCGGCTC GTCGTCCGGT TCCGGCTCGG CAGTCGCCGC GCGGCTGACG TTTGCGGCGC TCGGCTCCGA CACCGGCGGG TCGATCCGGA TGCCGGCGCA TTTCTGCGGC GTCACCGGGC TGAAGACCAC CGTCGGGCTG GTCAGCCGCG CCGGCGCGAT GCCGCTGTCG CATTCGCTCG ACACCGTCGG GCCGCTGGCC CGCACCGCGG AGGACTGCGC GCTGCTCACC GGTCTGATGG CCGGCGCCGA TCCCGCCGAT CCGACCGCGT CGCATCGCCC GGTGCCGGAC TATCTGGCCG CCACCAGACA ACCGCTGCAG GGCATCAGCA TCGGCATTCC GAAATCATTC TATGTCGACG ATCTCGATCC AGAGGTGGCG CGCGTGCTCG GCGACACCAA GTCGGCGCTG GCGCGCGAAG GCGTCCGCGT CGTCGAAGTC GAACTGCCGG ATCAGCGCCA GCTCAGCGCG GCCGCACAGC TCGTGCTCGC GGTCGAAGCC GCCGGCTTCC ACGGCCAGTG GATGCGCGAG CGGCCGCAGG ATTACGGCCC GCAGGTGCTG ATGCGGCTGC AGAACGCGCT GGCAATTCCG GCCGTCACCT ATCTCGAAGC GATGCGCTGG CGCGGCGTGG CGCTCGCCGA GTTCGTCGCG GCCGTGGCCG GCGTCGATGC GGTGCTGGCG CCGGTGTCGC CGGTGCCAGC GCCGACGATT GCAGAAAGCG ACGTCGGCAA CAGCCTGAAC GCCGAAGCTG TGATCCAGCG GCTGACCCGC TTCACCCGGC CGATCAACTA TCTCGGCCTG CCGTCGCTGG CGCTGCCCTG CGGCTTCTCG AACGCCGGCC TGCCGATCGG CCTGCAACTG ATCGGCCGCC CGTTCGACGA AGCGACGCTG CTGCGGATCG GCGCAGGCTG GCAGCGCGCC ACCGACTTCC ATCGGCAATG CCCGGAGCTG TAG
|
Protein sequence | MSLGNPALLT LTEVAEAIAS KKLSSREVTQ ACLDRIARAQ PKLNAFMAIE PESALAAADA ADTALAKGER KGPLHGVPLA HKDMYYETGF AVTCGSKIRR DFVAPTTSTA LQRLKDAGQV RLGTLQMSEF AYGPTGHNAH YGAVRNPWGL DHITGGSSSG SGSAVAARLT FAALGSDTGG SIRMPAHFCG VTGLKTTVGL VSRAGAMPLS HSLDTVGPLA RTAEDCALLT GLMAGADPAD PTASHRPVPD YLAATRQPLQ GISIGIPKSF YVDDLDPEVA RVLGDTKSAL AREGVRVVEV ELPDQRQLSA AAQLVLAVEA AGFHGQWMRE RPQDYGPQVL MRLQNALAIP AVTYLEAMRW RGVALAEFVA AVAGVDAVLA PVSPVPAPTI AESDVGNSLN AEAVIQRLTR FTRPINYLGL PSLALPCGFS NAGLPIGLQL IGRPFDEATL LRIGAGWQRA TDFHRQCPEL
|
| |