Gene Rpal_0790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0790 
Symbol 
ID6408443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp828310 
End bp829281 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content67% 
IMG OID642710703 
Productcobalamin biosynthesis protein CobD 
Protein accessionYP_001989823 
Protein GI192289218 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1270] Cobalamin biosynthesis protein CobD/CbiB 
TIGRFAM ID[TIGR00380] cobalamin biosynthesis protein CobD 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0828155 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGCTGG ATTCCCACGC GCTGCTGATC GTCGTGGTCG CACTCGTGCT CGACGCGCTG 
ATCGGCGATC CCGACTGGCT GTGGAAGCGG CTGGCGCATC CGGTGGTGTT GATCGGCACG 
CTGATCGGCT GGCTCGATCG GACACTCAAT CGCGACGACT GGGCGGAGCG CACCAAGAAG 
ATCGCCGGCA TCGTCGCGGT GATCTTCTTG ATCGCGGTCG CAGGACTGGT CGGCCTGTTG 
CTGGAAGCGC CGCTGCGGCA GTTGCCTGGC GGTTGGATCA TCGCGGCCGT ATTGGCCGCA 
ACGCTGATCG CGCAGCGCAG CCTATACGAT CACGTCGCGC GCGTGCGCGA CGCCTTCGCC 
GCCGGTGGTC TCAAGGACGC GCGCGAGAAG GTGTCCCTGA TCGTCGGCCG CGACCCGCAG 
ACGCTGGACG AAGCCGGTGT CTGCCGCGCC GCGATCGAAT CCAGCGCCGA GAATTACTCC 
GACGGCGTGG TCGCACCGGT GTTCTGGCTG GCGCTATTCG GGCTGCCGGG CCTTTTGATC 
TACAAAACGA TCAACACCGC CGATTCGATG ATCGGCCATC TGACGCCGCT GCACCGTTCG 
TTCGGCTGGG CCGCGGCGCG GCTCGACGAC TTCCTGAATC TAGTTCCGGC ACGGCTGTCG 
GGCCTGCTGA TCGCGCTGGT GGCACCGATT GTCCGCGGCT CGGTCAAGCA AGCGATCACG 
GTGATGCGGC GCGACGCCGG CAAGCATCGC TCGCCGAATG CCGGCTGGCC GGAATCGGCG 
ATGGCTGCGG CGATCGGCGT CGCGCTCGCG GGCCCGCGCA GCTACGGCGG CAAGATCACC 
GACGATCCTT ATCTCAACGC CGAAGCACGT AGCGAGGCAA CCCCGGCCGA TATCGGCCGC 
GCGCTGCGGG TGATGATCGC GGCTTGCGGC CTGCAGGCGG CGATCTACGC GGCGCTGGCG 
TTGGTGCTCT GA
 
Protein sequence
MLLDSHALLI VVVALVLDAL IGDPDWLWKR LAHPVVLIGT LIGWLDRTLN RDDWAERTKK 
IAGIVAVIFL IAVAGLVGLL LEAPLRQLPG GWIIAAVLAA TLIAQRSLYD HVARVRDAFA 
AGGLKDAREK VSLIVGRDPQ TLDEAGVCRA AIESSAENYS DGVVAPVFWL ALFGLPGLLI 
YKTINTADSM IGHLTPLHRS FGWAAARLDD FLNLVPARLS GLLIALVAPI VRGSVKQAIT 
VMRRDAGKHR SPNAGWPESA MAAAIGVALA GPRSYGGKIT DDPYLNAEAR SEATPADIGR 
ALRVMIAACG LQAAIYAALA LVL