| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0738 |
|---|
| Symbol | |
|---|
| ID | 6408391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 774125 |
|---|
| End bp | 776458 |
|---|
| Gene Length | 2334 bp |
|---|
| Protein Length | 777 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710653 |
|---|
| Product | 4-hydroxybenzoyl-CoA reductase, alpha subunit |
|---|
| Protein accession | YP_001989773 |
|---|
| Protein GI | 192289168 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs |
|---|
| TIGRFAM ID | [TIGR03194] 4-hydroxybenzoyl-CoA reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.821542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGTC CCGCATTCCA AGGCGGTCTC GACCGCGCCG GCGTGCCGCT AGTCGACGGT
ACTGATAAAG TCACGGGGCG GGCTCGGTAC ACCGCCGATC TCGATCATAC CGGAGCATTA
GTTGCTCGTA TCCTGCGTAG CCCGATCAGT CATGGCAATA TCGTCCGGCT CGATGTCAGC
AAGGCGTTGG CACTCGACGG TGTCGCGGGG ATCGTCACCG GCGAGGACTG CGCAATCACC
TATGGCGTGC TGCCGATCGC GATGAACGAG TATCCGATGG CGCGCGATCG CGTCCGGTAT
CGCGGCGAAC CGGTTGCGGC AGTGGCCGCG GTCGATGCCG AGACGGCGCA ACAGGCGCTC
GACCTGATCG AACTCGAGCT GCGTGAACTG CCGGCTTACT ACGAGTCGGA GGCCGCCCGC
GCCCCGGGTG CCTGGCTGCT GCACGACAAC AAGCCGGGCA ATATCGAGCG CGAGGTTCAC
AATGAGTTCG GCGATCTTGC CGCAGGCTTC GAAGCCGCCG ACCTGATCCG CACCCACACG
CATCATTGTG CCGAGGTCAA TCACGCGCAG ATCGAGCCGC ACGCCTGCCT GATGGATTAC
GATCCGGTCA CCGGGCGGCT CACCGCCCAG AGCGTGTCGC AGGTCGGCTA TTATCTGCAC
CTGATGCTAG CGCGCTGCCT CGAGATCGAT CCGTCGCGGG TGCGGGTGAT CAAGCCGTTC
GTCGGCGGTG GCTTCGGCGC CCGCGTGGAA GTCTTGAATT TCGAGGTGAT CGCCGCACTG
CTCGCCCGTA AGGCCAGTGG CAGAGTGTTG ATGCGGCTGA GCCGTGAAGA GACCTTCATC
ACCCACCGCG CCCGGCCGCA GACCGACATC ACCTTGACGA TCGGGATGCG GCGCGACGGC
CGGTTCACCG CCTGCTCGTG CGAAGTGGTG CAGCGCGGCG GCGCCTATGC GGGTTACGGC
ATCGTGACCA TCCTGTATGC CGGCGCGCTG CTGCAGGGGC TGTACGACAT CCCCGCCATC
AAATACGACG GCTACCGCGT CTACACCAAC CTGCCACCCT GCGGCGCGAT GCGCGGGCAC
GGCTCGGTCG ACGTTCGTCA CGCCTTCGAG AATCTGGTCG ATCGGATGGC GCGCGAACTC
GGTCTCGATC CTTTTGCGGT GCGCCGCGCC AATCTGCTGG CCGCGCCGAC GCGCACTCTC
AACGATCTGA TGGTCAACAG CTATGGTCTC GCCGAATGCC TCGACAAGGT CGAGCGCGCC
AGCGGTTGGC GTGAGCGAAT TGGCCGGCTG CCGCCGGGCA AGGGTCTCGG CATGGCGTGT
TCGCACTATG TCAGCGGTTC GGCCAAGCCG ATCCATTTCA CCGGCGAGCC CCATGCAGTT
GTGGCGCTGC GGCTCGATTT CGATGGTGGC ATCACCGCGC TCACCGGCGC CGCCGACATC
GGCCAGGGCT CGTCGACGGT GGTGGCGATC ACTGTTGCTG AAACCCTGGG CGTCGCGCTG
AACCGGGTCC GTGTAATTTC CGGCGACTCC GCCATCACTC CGAAGGACAA TGGCGCGTAT
TCGTCGCGCA TCACCTTCAT GGTCGGCAAC GCCGCAATCG ATGCGGCGAC CAAGCTGAAA
CAGATCCTGA TCGAGGCGGC CGCGCGCAAA CTCGAAGCCG CACCGGAGCA GGTCGAGTGT
GCCGGCGAGA GCTTCTTCAT CGGCAGCAGT GCCCAGGCCG CGCTCGGCTT CGCCGAAGTG
GTGAAAGCCG CGCTGGTCGA CGAGGGGGCC ATCACCGTCA AGGGCACCTT CACCTGCCCG
CCGGAGTCGC AGGGCGGTAA ACATCGCGGC GGTGCGGTCG GCTCGACGAT GGGCTTCAGC
TATGCGGCCC AGGTGGTCGA GGTCAGCGTC GACGACGCGA CTGGCCTGAT CACCGTCGAC
AAGGTCTGGG TCGCGCTCGA TTGCGGCCGC GCCATCAATC CGCTCGCGGT GGTCGGGCAG
GTGCAGGGCG CCGTGTGGAT GGGGATGGGG CAGGCGATGT GCGAAGAGAC GCGCTATCTC
GACGGGCTGC CCGCGCATGC CAGCTTCCTC GAATATCGGA TGCCGACGAT GATCGAATCG
CCGCCGATCG AAGTTGCGAT CGTCGAGAGC GTCGATCCGT TCGGGCCGTT CGGCGCCAAG
GAGGCCAGTG AAGGCGCACT CGCTGGGTTC CCGCCGGCGA TGGTGAATGC CGTCGCCAAT
GCGATCGGCA TCGATCTCGA TGATTTGCCG GCAACGCCCG ATCGGGTCGT CGAGGCGCTG
GCACGGCGGC GGCGCGAGGC AAAGCGGGCG GTGGCGGAGA GGGCAGCCTC ATGA
|
|---|
| Protein sequence | MSGPAFQGGL DRAGVPLVDG TDKVTGRARY TADLDHTGAL VARILRSPIS HGNIVRLDVS
KALALDGVAG IVTGEDCAIT YGVLPIAMNE YPMARDRVRY RGEPVAAVAA VDAETAQQAL
DLIELELREL PAYYESEAAR APGAWLLHDN KPGNIEREVH NEFGDLAAGF EAADLIRTHT
HHCAEVNHAQ IEPHACLMDY DPVTGRLTAQ SVSQVGYYLH LMLARCLEID PSRVRVIKPF
VGGGFGARVE VLNFEVIAAL LARKASGRVL MRLSREETFI THRARPQTDI TLTIGMRRDG
RFTACSCEVV QRGGAYAGYG IVTILYAGAL LQGLYDIPAI KYDGYRVYTN LPPCGAMRGH
GSVDVRHAFE NLVDRMAREL GLDPFAVRRA NLLAAPTRTL NDLMVNSYGL AECLDKVERA
SGWRERIGRL PPGKGLGMAC SHYVSGSAKP IHFTGEPHAV VALRLDFDGG ITALTGAADI
GQGSSTVVAI TVAETLGVAL NRVRVISGDS AITPKDNGAY SSRITFMVGN AAIDAATKLK
QILIEAAARK LEAAPEQVEC AGESFFIGSS AQAALGFAEV VKAALVDEGA ITVKGTFTCP
PESQGGKHRG GAVGSTMGFS YAAQVVEVSV DDATGLITVD KVWVALDCGR AINPLAVVGQ
VQGAVWMGMG QAMCEETRYL DGLPAHASFL EYRMPTMIES PPIEVAIVES VDPFGPFGAK
EASEGALAGF PPAMVNAVAN AIGIDLDDLP ATPDRVVEAL ARRRREAKRA VAERAAS
|
|---|
| |