| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0720 |
|---|
| Symbol | |
|---|
| ID | 6408373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 755704 |
|---|
| End bp | 756486 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642710635 |
|---|
| Product | 2-ketocyclohexanecarboxyl-CoA hydrolase |
|---|
| Protein accession | YP_001989755 |
|---|
| Protein GI | 192289150 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0447] Dihydroxynaphthoic acid synthase |
|---|
| TIGRFAM ID | [TIGR01929] naphthoate synthase (dihydroxynaphthoic acid synthetase)
[TIGR03210] 2-ketocyclohexanecarboxyl-CoA hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTCG AAGACCTGAT CTATGAGATC CGCAACGGCG TGGCGTGGAT CATCATCAAT
CGTCCGGACA AGATGAACGC GTTCCGCGGC ACCACCTGCG ACGAGTTGAT CAAGGCACTG
TACAAGGCCG GCTACGACAA GGACGTCGGC GCGATCGTGC TCGCCGGCGC CGGCGACCGC
GCCTTCTGCA CCGGCGGCGA TCAATCGACC CACGACGGCA ATTACGATGG CCGAGGCACC
GTCGGGCTGC CGATGGAGGA ACTGCACACT GCGATCCGCG ACGTGCCGAA GCCGGTGATC
GCCCGCGTGC AGGGCTATGC GATCGGCGGC GGCAACGTGC TGGCAACAAT CTGCGATCTG
ACGATCTGCT CGGAGAAAGC GATCTTCGGC CAGGTCGGCC CGAAGATGGG CTCGGTCGAT
CCGGGCTACG GCACCGCGTT CCTCGCCCGC GTCGTCGGCG AGAAGAAGGC CCGCGAGATT
TGGTATATGT GCCGGCGCTA CTCGGGCAAA GAAGCCGAGG CAATGGGCCT CGCCAATCTC
TGCGTGCCGC ACGACGAGCT CGACGCCGAA GTACAAAAGT GGGGCGAGGA ACTGTGCGAG
CGGTCACCGA CCGCACTCGC CATCGCCAAG CGCAGCTTCA ACATGGACAC CGCGCATCAA
GCCGGCATTG CCGGCATGGG GATGTACGCG CTGAAGCTCT ATTACGACAC CGAGGAATCC
CGCGAAGGCG TCAAGGCGCT GCAGGAGAAG CGCAAACCCG AGTTCCGCAA GTACATCAAA
TAA
|
|---|
| Protein sequence | MQFEDLIYEI RNGVAWIIIN RPDKMNAFRG TTCDELIKAL YKAGYDKDVG AIVLAGAGDR
AFCTGGDQST HDGNYDGRGT VGLPMEELHT AIRDVPKPVI ARVQGYAIGG GNVLATICDL
TICSEKAIFG QVGPKMGSVD PGYGTAFLAR VVGEKKAREI WYMCRRYSGK EAEAMGLANL
CVPHDELDAE VQKWGEELCE RSPTALAIAK RSFNMDTAHQ AGIAGMGMYA LKLYYDTEES
REGVKALQEK RKPEFRKYIK
|
|---|
| |