| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0628 |
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| Symbol | |
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| ID | 6408279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 682049 |
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| End bp | 683212 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710541 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001989663 |
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| Protein GI | 192289058 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCGA CTCCGACTGC GCTTTCGATC GCCCAAGACC TGCTGCGCTG CCCGTCTGTG
ACTCCGGCGG ACGCCGGCGC ACTCGACGTG CTGGAGACGC TGCTCAAAGG GGCGGGCTTC
ACGGTGCATC GCGTCACCTT CTCAGAGCCG GGCACCGCCG ACATCGACAA CCTGTATGCG
CGGATCGGCA ACACCTCGCC GCATCTTTGC TTCGCCGGCC ACACCGACGT GGTGCCGCCG
GGCGATGCCA GTGCCTGGAC CCACGGCGCG TTCGCCGGCG ACGTTGCGGA CGGCCTGCTG
TACGGTCGCG GTGCGGTCGA CATGAAAGGT GGTATCGCCT GCGCGGTCGC GGCAACGCTG
GACTACCTCG CGGCAAACGG CGGCCAGCCC AAGGGCTCGA TCTCGTTCCT GATCACCGGC
GACGAGGAAG ACGTCGCGGT CAACGGCACC GTCAAGCTGC TGCAATGGGC CGCCGAGCGC
GGCGAGCAAT TCGATCACTG CATCGTCGGT GAGCCGAGCA ATGTCGAGAC GATCGGCGAC
ACCATCAAGA TCGGCCGGCG CGGCTCGCAA TCCGGCGTGC TGATCGTCGA CGGTGTGCAG
GGCCACGTCG CCTATCCGCA CCGCGCCGCC AATCCGGTGC CGGATATCGC CCGGCTGATC
ACCACGCTGA ACGACGAGCC GCTCGATCAC GGCTCGGCGC AATTCCAGCC GTCCAACCTG
GAATTCACCT CGGTCGATGT CGGCAATCCG GCCACCAACG TGATCCCGGC GCAAGCGCGC
GCCAAATTCA ACATCCGCTT CAACGATCAC CACACTCAGG AAACGCTGAA GGCACTGGTC
GAGCAGCGGC TGGCTGCGGC GTGTGGCAAC CGCATCCGCG CCCACATCGA ATGGCTGCCG
TCGAACGCCG ATGTGTTCGT CACCAAGCCC GGCGCCTTCA CCGATCTGGT CGGCGCCGCG
ATCGCCGAGG TCACCGGACG CACGCCCGAG CTCAACACCG GCGGCGGCAC ATCCGACGCT
CGCTTCATCG CGAAATATTG CCAGGTGGTC GAATTCGGCT TGGTCGGCCA GACCATGCAC
CAGATCGACG AGCGCACGCC GGTCAGCGAC CTCGACAAAC TCACCGCGAT CTACCGCGGC
GTGCTGCAGA GATATTTCGC CTGA
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| Protein sequence | MTSTPTALSI AQDLLRCPSV TPADAGALDV LETLLKGAGF TVHRVTFSEP GTADIDNLYA
RIGNTSPHLC FAGHTDVVPP GDASAWTHGA FAGDVADGLL YGRGAVDMKG GIACAVAATL
DYLAANGGQP KGSISFLITG DEEDVAVNGT VKLLQWAAER GEQFDHCIVG EPSNVETIGD
TIKIGRRGSQ SGVLIVDGVQ GHVAYPHRAA NPVPDIARLI TTLNDEPLDH GSAQFQPSNL
EFTSVDVGNP ATNVIPAQAR AKFNIRFNDH HTQETLKALV EQRLAAACGN RIRAHIEWLP
SNADVFVTKP GAFTDLVGAA IAEVTGRTPE LNTGGGTSDA RFIAKYCQVV EFGLVGQTMH
QIDERTPVSD LDKLTAIYRG VLQRYFA
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