Gene Rpal_0580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0580 
Symbol 
ID6408230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp629453 
End bp631672 
Gene Length2220 bp 
Protein Length739 aa 
Translation table11 
GC content68% 
IMG OID642710493 
Productpenicillin-binding protein, 1A family 
Protein accessionYP_001989615 
Protein GI192289010 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02071] penicillin-binding protein 1B
[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGTGGG GCAGGAAAAA AGCCGGCGAG AGGCGAGAGC CGAAATTCGG GTCCGGTGAA 
TCGCTCGCCG ACATGCGCCT GACGCCGCAG GATCGGGTGA ACGTGGCCGA CGACAAGCCG
AAGAAGAAGC CCGCGGGCAA GGCCGGCGGC GGAGCGCGCA GCAAGCGCAA GCCGCGCAAG
GGCGTGATCG CGTCGGTGCG CCAGGCGGTC GGCCGCGTGG TGTATTGGAG CGCGGTCGCC
GGCATCTGGG CGGTGCTGGC CGTGGTCGGC GTCATGGTCT GGGTCGGCGC GCACCTGCCG
CCGATCCAGT CGCTGGAGAT TCCGAAGCGG CCGCCGACCA TCACCATCGT GGCCGACGAC
GGCTCGACCA TGGCGGTGCG CGGCGAGCAG GCCGGCACCA ACGTGGCGCT CAAGGAGCTG
CCGCCGTACC TACCGAAAGC ATTCATCGCG ATCGAAGACC GCCGGTTCTA TCAGCACTTC
GGCGTCGATC CGCTCGGCAT CGCCCGCGCC GCGGTGGCCA ACGTGCTGCA CCGGGGCGTG
TCGCAGGGCG GTTCGACGCT GACCCAGCAG CTCGCCAAGA ACCTGTTCCT AACGCAGGAC
CGCACGCTGA CCCGCAAGCT GCAGGAGGTC GAGCTGGCGC TGTGGCTGGA GCGCAAGCAC
TCCAAGGCCG AGATCCTCGA ACTGTATCTG AACCGGGTCT ATTTCGGCTC CGGCGCCTAC
GGGGTCGAGG CCGCGGCGCA GAAGTATTTC GGCAAGTCGG CCAAGGACGT CACGCTGGTC
GAGGCGGCGA TGCTGGCCGG TCTCGTCAAA TCGCCTTCGC GCCTTGCGCC GAACCGCAAT
CCCGAAGGCG CCGAAAAGCG CGCCCAGATC GTGTTGGCTG CCATGGCCGA CGCTGGCTTC
GTCACCGACA AGCAGGCCCA GGCCGCGATC GCCAACCCGG TCTACACCGT CAAGCCGACC
GGTGCCGGCA CCATCAACTA CGTCGCCGAC TGGATCACCG AGATCCTGGA TGATCTGGTC
GGCCAGATCG ACCAGTCGAT CATCGTCGAG ACCTCGATCG ATCCGAGGCT GCAGTCGGTC
GCCGAGGCCG CGATCATCGA CGAGCTGGCG GCCAAGAGCG TCAAATACAA GGTGACGCAG
GGGGCGCTGG TGGCGATGAC GCCGGACGGC ACGGTGCGGG CCATGATCGG CGGGCGCAAT
TACGCCGACA GCCAGTTCAA CCGCGCCGTC ACCGCCAAGC GGCAGCCGGG CTCTGCGTTC
AAGCCGTTCG TGTATCTGAC GGCGGTCGAA GCTGGGCTGA CACCCGACAC CATCCGCCAG
GATGCGCCGC TCGATCTCAA AGGCTGGAAG CCGGAGAACT ACACCCACGA ATATTTCGGC
TCGGTGACGC TGACCCAGGC GCTGGCGATG TCGCTGAACA CGGTGGCGGT GCGGCTCGGC
CTCGAGGTCG GGCCGAAGAA CGTGGTGCGG ACCGCGCACC GGCTCGGCAT CGCCTCCAAG
CTCGATGCCA ACCCGTCGAT CGCGCTCGGC ACCTCTGAAG TCACGCTGAC CGAGCTGGTC
GGCGCCTACT CCACCTTCGC CAATGGCGGG CTATTGGTGT CGCCGCATGT GGTGAAACGG
ATCCGCACCT TGCAGGGCAA CAAGGTGCTG TACGTCCGCA GCGACGAGCC GGCGAGCCGG
GTGGTCGATC CGCGTGCGGT GGCGATGATG AACACCATGA TGCAGGAGAC GCTGCGCTCC
GGCACCGCCC ACAAGGCGGA CCTGCCGGGC TGGGTCGCGG CCGGCAAAAC CGGCACCAGC
CAGGATTTCC GCGACGCCTG GTTCCTCGGC TACACCTCCA CGCTGGTCAC CGGCGTCTGG
CTCGGCAACG ACGACAACTC GCCGACCAAG AAGGCGACCG GCGGCGGATT GCCGGTCGAA
GTGTGGACGC GGTTCATGCG CGAAGCGCTC AAGGGCGAGA CTCCGCAGCC CTTGCCGGGC
GACTGGAGCG GCGGCCCGAT CGTCAGCAGC ACGCCCTCCG CGCTCGGCGG GAGCCTAAGC
GGCGCCCCGA CGGGCGGCGG CACCATCGCG CAAGCCGGAC CGCGCGGCGA AACCCAGGTG
ATCAACGCTC CGCCGCCCCC AGGGTCAGGC CGGATGCCTC CGCCGACCCG CGCCAATGTG
CGACCGGAGG CCGACGCCGG CCTGGATGGA TGGCTGATGG ATCGGCTGTT CGGGCGGTGA
 
Protein sequence
MAWGRKKAGE RREPKFGSGE SLADMRLTPQ DRVNVADDKP KKKPAGKAGG GARSKRKPRK 
GVIASVRQAV GRVVYWSAVA GIWAVLAVVG VMVWVGAHLP PIQSLEIPKR PPTITIVADD
GSTMAVRGEQ AGTNVALKEL PPYLPKAFIA IEDRRFYQHF GVDPLGIARA AVANVLHRGV
SQGGSTLTQQ LAKNLFLTQD RTLTRKLQEV ELALWLERKH SKAEILELYL NRVYFGSGAY
GVEAAAQKYF GKSAKDVTLV EAAMLAGLVK SPSRLAPNRN PEGAEKRAQI VLAAMADAGF
VTDKQAQAAI ANPVYTVKPT GAGTINYVAD WITEILDDLV GQIDQSIIVE TSIDPRLQSV
AEAAIIDELA AKSVKYKVTQ GALVAMTPDG TVRAMIGGRN YADSQFNRAV TAKRQPGSAF
KPFVYLTAVE AGLTPDTIRQ DAPLDLKGWK PENYTHEYFG SVTLTQALAM SLNTVAVRLG
LEVGPKNVVR TAHRLGIASK LDANPSIALG TSEVTLTELV GAYSTFANGG LLVSPHVVKR
IRTLQGNKVL YVRSDEPASR VVDPRAVAMM NTMMQETLRS GTAHKADLPG WVAAGKTGTS
QDFRDAWFLG YTSTLVTGVW LGNDDNSPTK KATGGGLPVE VWTRFMREAL KGETPQPLPG
DWSGGPIVSS TPSALGGSLS GAPTGGGTIA QAGPRGETQV INAPPPPGSG RMPPPTRANV
RPEADAGLDG WLMDRLFGR