| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0580 |
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| Symbol | |
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| ID | 6408230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 629453 |
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| End bp | 631672 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642710493 |
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| Product | penicillin-binding protein, 1A family |
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| Protein accession | YP_001989615 |
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| Protein GI | 192289010 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B
[TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTGGG GCAGGAAAAA AGCCGGCGAG AGGCGAGAGC CGAAATTCGG GTCCGGTGAA
TCGCTCGCCG ACATGCGCCT GACGCCGCAG GATCGGGTGA ACGTGGCCGA CGACAAGCCG
AAGAAGAAGC CCGCGGGCAA GGCCGGCGGC GGAGCGCGCA GCAAGCGCAA GCCGCGCAAG
GGCGTGATCG CGTCGGTGCG CCAGGCGGTC GGCCGCGTGG TGTATTGGAG CGCGGTCGCC
GGCATCTGGG CGGTGCTGGC CGTGGTCGGC GTCATGGTCT GGGTCGGCGC GCACCTGCCG
CCGATCCAGT CGCTGGAGAT TCCGAAGCGG CCGCCGACCA TCACCATCGT GGCCGACGAC
GGCTCGACCA TGGCGGTGCG CGGCGAGCAG GCCGGCACCA ACGTGGCGCT CAAGGAGCTG
CCGCCGTACC TACCGAAAGC ATTCATCGCG ATCGAAGACC GCCGGTTCTA TCAGCACTTC
GGCGTCGATC CGCTCGGCAT CGCCCGCGCC GCGGTGGCCA ACGTGCTGCA CCGGGGCGTG
TCGCAGGGCG GTTCGACGCT GACCCAGCAG CTCGCCAAGA ACCTGTTCCT AACGCAGGAC
CGCACGCTGA CCCGCAAGCT GCAGGAGGTC GAGCTGGCGC TGTGGCTGGA GCGCAAGCAC
TCCAAGGCCG AGATCCTCGA ACTGTATCTG AACCGGGTCT ATTTCGGCTC CGGCGCCTAC
GGGGTCGAGG CCGCGGCGCA GAAGTATTTC GGCAAGTCGG CCAAGGACGT CACGCTGGTC
GAGGCGGCGA TGCTGGCCGG TCTCGTCAAA TCGCCTTCGC GCCTTGCGCC GAACCGCAAT
CCCGAAGGCG CCGAAAAGCG CGCCCAGATC GTGTTGGCTG CCATGGCCGA CGCTGGCTTC
GTCACCGACA AGCAGGCCCA GGCCGCGATC GCCAACCCGG TCTACACCGT CAAGCCGACC
GGTGCCGGCA CCATCAACTA CGTCGCCGAC TGGATCACCG AGATCCTGGA TGATCTGGTC
GGCCAGATCG ACCAGTCGAT CATCGTCGAG ACCTCGATCG ATCCGAGGCT GCAGTCGGTC
GCCGAGGCCG CGATCATCGA CGAGCTGGCG GCCAAGAGCG TCAAATACAA GGTGACGCAG
GGGGCGCTGG TGGCGATGAC GCCGGACGGC ACGGTGCGGG CCATGATCGG CGGGCGCAAT
TACGCCGACA GCCAGTTCAA CCGCGCCGTC ACCGCCAAGC GGCAGCCGGG CTCTGCGTTC
AAGCCGTTCG TGTATCTGAC GGCGGTCGAA GCTGGGCTGA CACCCGACAC CATCCGCCAG
GATGCGCCGC TCGATCTCAA AGGCTGGAAG CCGGAGAACT ACACCCACGA ATATTTCGGC
TCGGTGACGC TGACCCAGGC GCTGGCGATG TCGCTGAACA CGGTGGCGGT GCGGCTCGGC
CTCGAGGTCG GGCCGAAGAA CGTGGTGCGG ACCGCGCACC GGCTCGGCAT CGCCTCCAAG
CTCGATGCCA ACCCGTCGAT CGCGCTCGGC ACCTCTGAAG TCACGCTGAC CGAGCTGGTC
GGCGCCTACT CCACCTTCGC CAATGGCGGG CTATTGGTGT CGCCGCATGT GGTGAAACGG
ATCCGCACCT TGCAGGGCAA CAAGGTGCTG TACGTCCGCA GCGACGAGCC GGCGAGCCGG
GTGGTCGATC CGCGTGCGGT GGCGATGATG AACACCATGA TGCAGGAGAC GCTGCGCTCC
GGCACCGCCC ACAAGGCGGA CCTGCCGGGC TGGGTCGCGG CCGGCAAAAC CGGCACCAGC
CAGGATTTCC GCGACGCCTG GTTCCTCGGC TACACCTCCA CGCTGGTCAC CGGCGTCTGG
CTCGGCAACG ACGACAACTC GCCGACCAAG AAGGCGACCG GCGGCGGATT GCCGGTCGAA
GTGTGGACGC GGTTCATGCG CGAAGCGCTC AAGGGCGAGA CTCCGCAGCC CTTGCCGGGC
GACTGGAGCG GCGGCCCGAT CGTCAGCAGC ACGCCCTCCG CGCTCGGCGG GAGCCTAAGC
GGCGCCCCGA CGGGCGGCGG CACCATCGCG CAAGCCGGAC CGCGCGGCGA AACCCAGGTG
ATCAACGCTC CGCCGCCCCC AGGGTCAGGC CGGATGCCTC CGCCGACCCG CGCCAATGTG
CGACCGGAGG CCGACGCCGG CCTGGATGGA TGGCTGATGG ATCGGCTGTT CGGGCGGTGA
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| Protein sequence | MAWGRKKAGE RREPKFGSGE SLADMRLTPQ DRVNVADDKP KKKPAGKAGG GARSKRKPRK
GVIASVRQAV GRVVYWSAVA GIWAVLAVVG VMVWVGAHLP PIQSLEIPKR PPTITIVADD
GSTMAVRGEQ AGTNVALKEL PPYLPKAFIA IEDRRFYQHF GVDPLGIARA AVANVLHRGV
SQGGSTLTQQ LAKNLFLTQD RTLTRKLQEV ELALWLERKH SKAEILELYL NRVYFGSGAY
GVEAAAQKYF GKSAKDVTLV EAAMLAGLVK SPSRLAPNRN PEGAEKRAQI VLAAMADAGF
VTDKQAQAAI ANPVYTVKPT GAGTINYVAD WITEILDDLV GQIDQSIIVE TSIDPRLQSV
AEAAIIDELA AKSVKYKVTQ GALVAMTPDG TVRAMIGGRN YADSQFNRAV TAKRQPGSAF
KPFVYLTAVE AGLTPDTIRQ DAPLDLKGWK PENYTHEYFG SVTLTQALAM SLNTVAVRLG
LEVGPKNVVR TAHRLGIASK LDANPSIALG TSEVTLTELV GAYSTFANGG LLVSPHVVKR
IRTLQGNKVL YVRSDEPASR VVDPRAVAMM NTMMQETLRS GTAHKADLPG WVAAGKTGTS
QDFRDAWFLG YTSTLVTGVW LGNDDNSPTK KATGGGLPVE VWTRFMREAL KGETPQPLPG
DWSGGPIVSS TPSALGGSLS GAPTGGGTIA QAGPRGETQV INAPPPPGSG RMPPPTRANV
RPEADAGLDG WLMDRLFGR
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