| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0578 |
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| Symbol | |
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| ID | 6408228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 626762 |
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| End bp | 628090 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642710491 |
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| Product | polyhydroxyalkanoate depolymerase, intracellular |
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| Protein accession | YP_001989613 |
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| Protein GI | 192289008 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
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| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.124675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGTTG TCATTGGTGA ATTTGGTCGC CCGCCGGATA TGCCTGCGGA AGTCAGTCCG
GCGCTCACCA CGCCGATGTA CTGGTTCTAC GAGATGGCGC ACGCCTCGCT GAATCCAGCG
CGGGCGATGT CGGACGCGAC CAAGCTGGCG TTCAAGAACC CGCTCAACCC GTGGAGTCAC
ACCGAATTCG GCAAGTCGAT TGCCGCGGCA TGCGAAGTGT TCGAGCGCAC CACCCGCCGC
TACGGCAAGC CGGAGTGGGG GCTCGACGAC ACTGAAGTCA ACGGCATGCG GGTCCCGATC
GAGATCCACA ACGTCTGGGA AAAGCCGTTC TGCCGGCTGT TATATTTCGA ACGCAAGCTG
GAGCGTCCGC TGCGCCATCC GCAGCCGCGG CTGCTGATCG TGGCGCCGAT GTCCGGTCAC
TACGCCACGC TGCTGCGCGG CACGGTCGAA GCTTTCCTGC CGACCCATGA GGTCTACATC
ACCGACTGGG CGGACGCCCG GATGGTGCCG ATGGCCGCCG GCCGGTTCGA CCTCGACGAT
TATGTCGATT ACGTCATCGA GATGCTGCAG ACGCTGGGCG GCAACGTTCA CGTCATGGCG
GTGTGCCAGC CGTCGGTGCC GGTGCTGACC GCGGTGTCGG TGATGGAGGC GAACGAAGAT
CCGTTCGTGC CGTTGTCGAT GACGCTGATG GGTGGTCCGA TCGACACCCG CCGCAGTCCG
ACAGCAGTGA ACAACCTCGC GGCCGAGAAG GGCATCGACT GGTTCCGCAA CCACGTCATC
ACCAAAGTGC CGTTCCCGCA TCCGGGCTTC ATGCGCGACG TCTATCCGGG GTTCCTGCAG
CTCAACGGGT TCATCAGCAT GAACCTCGAC CGGCACATGG ACGCGCATCG TAACCTGTTC
AACCATCTGG TTCAGGGCGA CGGCGACCTC GCGGACAAAC ATCGCGAGTT CTACGACGAG
TATCTGGCGG TGATGGATCT GACGGCGGAG TTCTATCTGC AGACCGTCGA TCTGGTGTTC
GTCAAGCACG CGCTGCCGAA GGGCGAGATG ACGCATCGTG GCAAGCTGGT CGAGCCGTCC
AAGGTCAAGC GCGTCGCGCT GATGACGGTG GAAGGCGAGA ACGACGACAT CTCCGGTCTC
GGCCAGACCG AGGCCACGCA TGGTTTGTGT TCGTCGATTC CGGATAATCG GCGCGTGCAC
TACGTGCAGA AGGGTGTCGG CCACTACGGT GTGTTCAACG GTTCGCGTTT CCGCTCGGAA
ATCGTGCCGC GGATCTGTGA TTTCCATGCG TCGTCGACGA GCGATACGTC GGCGCGCGCG
GCGGAGTGA
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| Protein sequence | MPVVIGEFGR PPDMPAEVSP ALTTPMYWFY EMAHASLNPA RAMSDATKLA FKNPLNPWSH
TEFGKSIAAA CEVFERTTRR YGKPEWGLDD TEVNGMRVPI EIHNVWEKPF CRLLYFERKL
ERPLRHPQPR LLIVAPMSGH YATLLRGTVE AFLPTHEVYI TDWADARMVP MAAGRFDLDD
YVDYVIEMLQ TLGGNVHVMA VCQPSVPVLT AVSVMEANED PFVPLSMTLM GGPIDTRRSP
TAVNNLAAEK GIDWFRNHVI TKVPFPHPGF MRDVYPGFLQ LNGFISMNLD RHMDAHRNLF
NHLVQGDGDL ADKHREFYDE YLAVMDLTAE FYLQTVDLVF VKHALPKGEM THRGKLVEPS
KVKRVALMTV EGENDDISGL GQTEATHGLC SSIPDNRRVH YVQKGVGHYG VFNGSRFRSE
IVPRICDFHA SSTSDTSARA AE
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