Gene Rpal_0551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0551 
Symbol 
ID6408201 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp601404 
End bp601991 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content66% 
IMG OID642710464 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_001989586 
Protein GI192288981 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.23743 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCAAT TGCGCGACGG TCCACGCCCG CCCTCGGCGG AGATGGCGGA CTGCATCGTC 
CGCATCGCGG TCGCGCAGGA TCGCGCGGCG TTCGAGACAC TGTTTCGCCA CTTCGCGCCG
CGCCTGAAAT CGTACTTCGC GCGGCGTGGC GGCGATCCGA CACTGGCCGA AGAGATCACC
CAGGAGACGA TGGTGTCGGT CTGGCGCAGT GCCGCGCAGT TCGACCCGGC CAGAGCCTCG
GCCTCGACCT GGATCTTCAC CATCGCGCGC AATCTCAGCA TCGACCGGCT GCGCCAGGCG
AAGCGGCCGG GCTTCGATCC CCATGATCCG GCGTTCGTGC CCGACGAGGA GGAGCCGCCC
GACCGGCGGC TGGAGCGCAC CGAAACTGAG CAGCGGGTGC GCGAGGTGAT GGAGACGCTG
CCGTTCAACG AGAAGAGTGT TTTGATGTTG TCGTTCTACG AAAACCAATC GCATAGCGAG
ATCGCCGAGC AGCTCGGCCT GCCGGTCGGC ACGGTGAAAT CACGGATCCG GCTCGCCTTC
GGCAAACTGC GCGCCGCGCT CGACACCACC GCCGGAGAGC CGCGATGA
 
Protein sequence
MDQLRDGPRP PSAEMADCIV RIAVAQDRAA FETLFRHFAP RLKSYFARRG GDPTLAEEIT 
QETMVSVWRS AAQFDPARAS ASTWIFTIAR NLSIDRLRQA KRPGFDPHDP AFVPDEEEPP
DRRLERTETE QRVREVMETL PFNEKSVLML SFYENQSHSE IAEQLGLPVG TVKSRIRLAF
GKLRAALDTT AGEPR