| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0551 |
|---|
| Symbol | |
|---|
| ID | 6408201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 601404 |
|---|
| End bp | 601991 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710464 |
|---|
| Product | RNA polymerase sigma factor RpoE |
|---|
| Protein accession | YP_001989586 |
|---|
| Protein GI | 192288981 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.23743 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAAT TGCGCGACGG TCCACGCCCG CCCTCGGCGG AGATGGCGGA CTGCATCGTC
CGCATCGCGG TCGCGCAGGA TCGCGCGGCG TTCGAGACAC TGTTTCGCCA CTTCGCGCCG
CGCCTGAAAT CGTACTTCGC GCGGCGTGGC GGCGATCCGA CACTGGCCGA AGAGATCACC
CAGGAGACGA TGGTGTCGGT CTGGCGCAGT GCCGCGCAGT TCGACCCGGC CAGAGCCTCG
GCCTCGACCT GGATCTTCAC CATCGCGCGC AATCTCAGCA TCGACCGGCT GCGCCAGGCG
AAGCGGCCGG GCTTCGATCC CCATGATCCG GCGTTCGTGC CCGACGAGGA GGAGCCGCCC
GACCGGCGGC TGGAGCGCAC CGAAACTGAG CAGCGGGTGC GCGAGGTGAT GGAGACGCTG
CCGTTCAACG AGAAGAGTGT TTTGATGTTG TCGTTCTACG AAAACCAATC GCATAGCGAG
ATCGCCGAGC AGCTCGGCCT GCCGGTCGGC ACGGTGAAAT CACGGATCCG GCTCGCCTTC
GGCAAACTGC GCGCCGCGCT CGACACCACC GCCGGAGAGC CGCGATGA
|
|---|
| Protein sequence | MDQLRDGPRP PSAEMADCIV RIAVAQDRAA FETLFRHFAP RLKSYFARRG GDPTLAEEIT
QETMVSVWRS AAQFDPARAS ASTWIFTIAR NLSIDRLRQA KRPGFDPHDP AFVPDEEEPP
DRRLERTETE QRVREVMETL PFNEKSVLML SFYENQSHSE IAEQLGLPVG TVKSRIRLAF
GKLRAALDTT AGEPR
|
|---|
| |