Gene Rpal_0550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0550 
Symbol 
ID6408200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp600745 
End bp601407 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content71% 
IMG OID642710463 
Productanti-ECFsigma factor, ChrR 
Protein accessionYP_001989585 
Protein GI192288980 
COG category[T] Signal transduction mechanisms 
COG ID[COG3806] Anti-sigma factor 
TIGRFAM ID[TIGR02451] anti-sigma factor, putative, ChrR family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.259297 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGTGC GGCACCATAT CGGCGATGAT CTGCTGCTGA GCTACGCGGC CGGCACGCTG 
GACGAGGCCT CGAGCCTGCT GGTCGCCACC CATCTGGCGC TGTGCCCGCA TTGCCGCGCC 
CGCGCCGCAG CCGCCGATGC GCTCGGCGGC GAAATGCTCG ACGCGCTGCC TGCAGCGGCG 
GTGACGCCGC AGCTGTGGCA GAACGTGCTG GCGCGGACGC AAGACCAGCC GGAGACACCG 
CCGGCCATCC CTGCAACGGC GCTGCGGCCG CGTTCCGATA TCGTGATCCC GGAGCCGCTG 
CGCAGCTATC TGGGCACCGA CCTCGCCGGC CTGCGCTGGA CACGGCTGGC GCCGCGGGTG 
CAGCAGATCA CCATCGACAT TCCGGGCTGC CGTCCTCGCG CGCGGATGCT GCGGTTCGAG 
GCCGGCACGC GTGTTCTTGA ACACGGGCAT TCCGGGCGCG AGCTGACGCT GGTGTTGCAC 
GGATCACTGT GTGACGGCGC TGCGGTGATG CGGCGCGGTG ACGTCGCCGA GACGGACGAG 
GGCACCGAGC ACCAGCCGCA GGCCGGCCCC GACGGCGACT GCATCTGCCT CGCCGTCACC 
GACGCGCCGC TGCGGTTCAA GAGCCGGTTC GCCCGGCTGC TGCAGCCCTG GTTCGGTATC 
TAG
 
Protein sequence
MTVRHHIGDD LLLSYAAGTL DEASSLLVAT HLALCPHCRA RAAAADALGG EMLDALPAAA 
VTPQLWQNVL ARTQDQPETP PAIPATALRP RSDIVIPEPL RSYLGTDLAG LRWTRLAPRV 
QQITIDIPGC RPRARMLRFE AGTRVLEHGH SGRELTLVLH GSLCDGAAVM RRGDVAETDE 
GTEHQPQAGP DGDCICLAVT DAPLRFKSRF ARLLQPWFGI