| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0530 |
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| Symbol | |
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| ID | 6408179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 577475 |
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| End bp | 579217 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710442 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001989565 |
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| Protein GI | 192288960 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGTCCG CCGCTCCTGC GCCCCGCTCA TCGACCGCGC AGACCGTGAC CGCGCCTGAT
TCGTTGTTGC TGTCGCTGCT CGGCCAAGCC GCCTTCGTCT GGGATCTCGC CTCCGATACG
CTGAGCTGGA CCGGCCGGGC TGCCGAATTT TTTCAGGACA TTCCCGCCGA AACGCTGGCC
ACCGGCGCAA GCTTCGCGGC GCTGCTGGAG CCATCGCGCC ACGTCCGGTC GGACGCGTTG
CTGAACGGCG CCGCCGCGGC CGGACCGGGC TGCGTGCCGT ATCGGATCGA ATACGGCATC
CGGGCCTCGA CTGCGGCCCC GGTAAGCTGG ATCGAGGAGA CCGGGGTCTG GTTCGCCGGT
CCCGACGGCC GCCCGGCGCG GGTCGAGGGC ATCGTCCGCA TCAACAACGA GCGTCACGCC
CGCGACGAGC AACTCCTCAA GCTGTCGCAG CACGATCCGC TGACCGGCGA ACTCAACCGC
ACCCATCTGA TAGGTGCGCT CGCCGAAGCT ATCGAGGAAG CGTCGCGCTT CCGCACCAGC
CTGTCGTTCA TGCTGGTCGG CCTCGATCAT CTGGCGCGCG TCAACGACTC GTTCGGCTTC
GATGTCGCCG ACGAAGTGAT CTTGACTATT GCCGGCCGGA TCCGCAATCG GCTGCGCGCC
GGCGATCAGC TCGGTCGGTT CTCCGGCAAC AAATTCGGAC TGGTGCTGAA GAACTGCACG
GTCGACGACG CCCATATAGC GGCTGAACGG TTTCTCGCCG CGGTGCGTGA CGAGATCGTG
CCGACCAAAT CGGGCCCGGT ATCGCTCACC GCGTCGATCG GTGCGGTAAG CGCGCCGCGC
CACGCCCGCA CCGCCGATGA AGCCATCAAC CGCGCCCAAG AGGCATTGGC CGCCGCCAAG
CATCGGCGCA GCGGCTCATT CGCGATGTGG CGGCCGAATG TCGAGCGCGA CACGCAGCGC
CGCGTCAACA TCCGCGTCAC CGACGAGATC GTCACCGCGC TGAACGAACG CCGCATCGTG
CTGGCCTACG AGCCGGTGGT CGACGCATCG TCGCGGGCGC CGGCTTTCCA CGAATGCCTG
GTGCGTATGA AGACCGACGA TGGTCAGGTT CTGTTTGCGC CGGACATCGT CCCGGTGGCG
GAGCGGCTCG GGCTGATCCG GCTGGTCGAT CATCGCGTGC TCGAACTGGT GGTGGCCGAA
CTCGCTGCGG CGCCCGGCGT GACGCTCAGC CTCAACATCT CGCCCGACAC CACCATCGAT
GCCGATTGGT GGGCCGGCAT CGAATCGCTG ATGCTGGCCC ATCCCGGCAT CGCCGAGCGG
CTGATCGTCG AGATCACCGA GACGGTGGCG ATCCCTGACC TTGATGAGGT GCGCGGCTTC
GTCAATCGGC TGAAGACTCT AGGTGCGAAG ATCGCGATCG ACGATTTCGG CGCCGGCTAC
ACTTCATTCC GCAATCTGCG CGCGCTCGGC GTCGACATCG TCAAGATCGA CGGCGCCTTC
GTGCAGAACA TCGCACGGTC GGCCGATGAC CGCGCGTTCG TGCAGACGCT GATTGATCTG
GCGCGCCGGC TCGGCATCAA GACCGTGGCC GAATGGGTGC AGGACGACGA GTCCGCGCAG
CTGTTGCGCG ACTGGGGTTG CGACTACATC CAGGGGCGGC TTATCGGCCT GGCGTCACAG
CAGCGGCCGT GGCCGCTCGC CGCCGAAGCG GCTGCGCGCC TCGCCGGCAA AGCCGTCAAT
TAG
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| Protein sequence | MSSAAPAPRS STAQTVTAPD SLLLSLLGQA AFVWDLASDT LSWTGRAAEF FQDIPAETLA
TGASFAALLE PSRHVRSDAL LNGAAAAGPG CVPYRIEYGI RASTAAPVSW IEETGVWFAG
PDGRPARVEG IVRINNERHA RDEQLLKLSQ HDPLTGELNR THLIGALAEA IEEASRFRTS
LSFMLVGLDH LARVNDSFGF DVADEVILTI AGRIRNRLRA GDQLGRFSGN KFGLVLKNCT
VDDAHIAAER FLAAVRDEIV PTKSGPVSLT ASIGAVSAPR HARTADEAIN RAQEALAAAK
HRRSGSFAMW RPNVERDTQR RVNIRVTDEI VTALNERRIV LAYEPVVDAS SRAPAFHECL
VRMKTDDGQV LFAPDIVPVA ERLGLIRLVD HRVLELVVAE LAAAPGVTLS LNISPDTTID
ADWWAGIESL MLAHPGIAER LIVEITETVA IPDLDEVRGF VNRLKTLGAK IAIDDFGAGY
TSFRNLRALG VDIVKIDGAF VQNIARSADD RAFVQTLIDL ARRLGIKTVA EWVQDDESAQ
LLRDWGCDYI QGRLIGLASQ QRPWPLAAEA AARLAGKAVN
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