Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0522 |
Symbol | |
ID | 6408171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 571208 |
End bp | 572791 |
Gene Length | 1584 bp |
Protein Length | 527 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642710434 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001989557 |
Protein GI | 192288952 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.749602 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCGATCG ACATCGGGTT GGCGCTAATC TCGCCTGAGG GCGAGATCGT GATGACCAAT CCGATGTTCG ATCTGGCATT CGGTGCGATC CCGCACGAAC AATTGCTGAG CCGGTTCGGC TTCGACGCCT GCCGCGAGGG CGGCAAGGTC GCGCGCCCGG CGATCTTCCC GGGCGACCGA ATCTACTGGG TCGACATCAC GTCTTTCCCC GACGGCTGGC TGATCAGCGC TGCCGATATC AGCGAGCGCC TGCGCCAGGG CATCGTCGGC GCCGAACTGG CGCGCACCGA TCGCCTCACC CAACTGGCAA ACCGGCTGGT GTTCCACGAG CGGCTCGCCG ATCTGCTGGC GCAGCCGGCC GATGTCCGGC GCGACGCTGC GGTGCTGACG ATCGACCTCG ATCGCTTCAA GGCGATCAAC GACTCCCTCG GGCGCAATAT CGGCGATGCG CTGCTGTGCC TGGTGGCCAA GCGCATCAGC TCGGCGCTGA CGCCGAGCGA CGTGCTGGCC CGGATCGAGG CTGATGAGTT CGGCGTGATC CAGGTGGGGC GCGATCAGCC TGATGCTGCG GTGATCCTGG CCAAGCGTCT GGTCGATCTG CTGAGCCGGC CGTATCTGCT CGAAGGTCAG CTGATCAATG TCAGCGCCTT CGTCGGCATA GCGCTGCCGA TCGACGACGA ACTCGACGTC GACGGCGTGC TGAAGAACGC CGACCTGGCG CTGCATCGCG CCAAGCAGGA GCGCTACGCG GGCTATCGCG TGTTCGAATC CGCCATGGAC GAGAGCATGC GGGCGCGGCG TGCGCTGGAG ACCGATCTGC GCCGCGCGCT GGCGCTGCGC GAGTTCTCGC TGGTGTATCA GCCGCAGGTC AATCTGCAGA GCCGCCGGGT GGCGGGCTTC GAGGCGCTGC TGCGGTGGCG CTGCCCGAGG CGCGGCCCGG TGTCGCCGCT CGATTTCATT CCGATCGCCG AGGAAACCGG GATCATCGGC CCGATCGGCG AATGGGTGCT GCGCACCGCC TGCCGCGATG CTGCAAGCTG GCCGGGCGAC TACACGGTTG CGGTCAACAT TTCGGCAATC CAGTTCACCA ACCGGTCGCT GGTCGCGACT GTCGTCTCCG CTATCGCCGA CAGTGGGCTC GATCCGCGGC GGCTGGAATT GGAGATCACC GAAAGTGTGA TGCTCGATGC CCGCGGCAAT GCGCTGGCGG TGCTGCAGCA ACTCCGCGGC CTCGGCGTCC GGGTGTCGCT CGATGATTTC GGAACCGGCT ATTCGTCGCT CGGCTACTTG CGCAGCTTCC CGTTCGACAA GATCAAGATC GATCAGTCGT TCGTGCGCGA GGCCTCCGAC GATCGCGGCA ACCGCGCGAT CGTGCGGGCG ATCGCCTCGC TCGGCGCCAG CCTCGGCATG GCGACGGTGG CCGAGGGCGT CGAAACCGAG GATCAGCTGG CGCGGGTCGC GGCCGACGGC TGCACCGACG TCCAGGGCTA TCTGATCAGC CGGCCGATCC CGCCGGGAGA GATCGAGCAT TTTCTCGCCG AGAGCCGCAA TGTGATCGAT GCGGCGACGG AAGTCAGTCT CTGA
|
Protein sequence | MAIDIGLALI SPEGEIVMTN PMFDLAFGAI PHEQLLSRFG FDACREGGKV ARPAIFPGDR IYWVDITSFP DGWLISAADI SERLRQGIVG AELARTDRLT QLANRLVFHE RLADLLAQPA DVRRDAAVLT IDLDRFKAIN DSLGRNIGDA LLCLVAKRIS SALTPSDVLA RIEADEFGVI QVGRDQPDAA VILAKRLVDL LSRPYLLEGQ LINVSAFVGI ALPIDDELDV DGVLKNADLA LHRAKQERYA GYRVFESAMD ESMRARRALE TDLRRALALR EFSLVYQPQV NLQSRRVAGF EALLRWRCPR RGPVSPLDFI PIAEETGIIG PIGEWVLRTA CRDAASWPGD YTVAVNISAI QFTNRSLVAT VVSAIADSGL DPRRLELEIT ESVMLDARGN ALAVLQQLRG LGVRVSLDDF GTGYSSLGYL RSFPFDKIKI DQSFVREASD DRGNRAIVRA IASLGASLGM ATVAEGVETE DQLARVAADG CTDVQGYLIS RPIPPGEIEH FLAESRNVID AATEVSL
|
| |