| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0522 |
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| Symbol | |
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| ID | 6408171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 571208 |
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| End bp | 572791 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710434 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001989557 |
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| Protein GI | 192288952 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.749602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGATCG ACATCGGGTT GGCGCTAATC TCGCCTGAGG GCGAGATCGT GATGACCAAT
CCGATGTTCG ATCTGGCATT CGGTGCGATC CCGCACGAAC AATTGCTGAG CCGGTTCGGC
TTCGACGCCT GCCGCGAGGG CGGCAAGGTC GCGCGCCCGG CGATCTTCCC GGGCGACCGA
ATCTACTGGG TCGACATCAC GTCTTTCCCC GACGGCTGGC TGATCAGCGC TGCCGATATC
AGCGAGCGCC TGCGCCAGGG CATCGTCGGC GCCGAACTGG CGCGCACCGA TCGCCTCACC
CAACTGGCAA ACCGGCTGGT GTTCCACGAG CGGCTCGCCG ATCTGCTGGC GCAGCCGGCC
GATGTCCGGC GCGACGCTGC GGTGCTGACG ATCGACCTCG ATCGCTTCAA GGCGATCAAC
GACTCCCTCG GGCGCAATAT CGGCGATGCG CTGCTGTGCC TGGTGGCCAA GCGCATCAGC
TCGGCGCTGA CGCCGAGCGA CGTGCTGGCC CGGATCGAGG CTGATGAGTT CGGCGTGATC
CAGGTGGGGC GCGATCAGCC TGATGCTGCG GTGATCCTGG CCAAGCGTCT GGTCGATCTG
CTGAGCCGGC CGTATCTGCT CGAAGGTCAG CTGATCAATG TCAGCGCCTT CGTCGGCATA
GCGCTGCCGA TCGACGACGA ACTCGACGTC GACGGCGTGC TGAAGAACGC CGACCTGGCG
CTGCATCGCG CCAAGCAGGA GCGCTACGCG GGCTATCGCG TGTTCGAATC CGCCATGGAC
GAGAGCATGC GGGCGCGGCG TGCGCTGGAG ACCGATCTGC GCCGCGCGCT GGCGCTGCGC
GAGTTCTCGC TGGTGTATCA GCCGCAGGTC AATCTGCAGA GCCGCCGGGT GGCGGGCTTC
GAGGCGCTGC TGCGGTGGCG CTGCCCGAGG CGCGGCCCGG TGTCGCCGCT CGATTTCATT
CCGATCGCCG AGGAAACCGG GATCATCGGC CCGATCGGCG AATGGGTGCT GCGCACCGCC
TGCCGCGATG CTGCAAGCTG GCCGGGCGAC TACACGGTTG CGGTCAACAT TTCGGCAATC
CAGTTCACCA ACCGGTCGCT GGTCGCGACT GTCGTCTCCG CTATCGCCGA CAGTGGGCTC
GATCCGCGGC GGCTGGAATT GGAGATCACC GAAAGTGTGA TGCTCGATGC CCGCGGCAAT
GCGCTGGCGG TGCTGCAGCA ACTCCGCGGC CTCGGCGTCC GGGTGTCGCT CGATGATTTC
GGAACCGGCT ATTCGTCGCT CGGCTACTTG CGCAGCTTCC CGTTCGACAA GATCAAGATC
GATCAGTCGT TCGTGCGCGA GGCCTCCGAC GATCGCGGCA ACCGCGCGAT CGTGCGGGCG
ATCGCCTCGC TCGGCGCCAG CCTCGGCATG GCGACGGTGG CCGAGGGCGT CGAAACCGAG
GATCAGCTGG CGCGGGTCGC GGCCGACGGC TGCACCGACG TCCAGGGCTA TCTGATCAGC
CGGCCGATCC CGCCGGGAGA GATCGAGCAT TTTCTCGCCG AGAGCCGCAA TGTGATCGAT
GCGGCGACGG AAGTCAGTCT CTGA
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| Protein sequence | MAIDIGLALI SPEGEIVMTN PMFDLAFGAI PHEQLLSRFG FDACREGGKV ARPAIFPGDR
IYWVDITSFP DGWLISAADI SERLRQGIVG AELARTDRLT QLANRLVFHE RLADLLAQPA
DVRRDAAVLT IDLDRFKAIN DSLGRNIGDA LLCLVAKRIS SALTPSDVLA RIEADEFGVI
QVGRDQPDAA VILAKRLVDL LSRPYLLEGQ LINVSAFVGI ALPIDDELDV DGVLKNADLA
LHRAKQERYA GYRVFESAMD ESMRARRALE TDLRRALALR EFSLVYQPQV NLQSRRVAGF
EALLRWRCPR RGPVSPLDFI PIAEETGIIG PIGEWVLRTA CRDAASWPGD YTVAVNISAI
QFTNRSLVAT VVSAIADSGL DPRRLELEIT ESVMLDARGN ALAVLQQLRG LGVRVSLDDF
GTGYSSLGYL RSFPFDKIKI DQSFVREASD DRGNRAIVRA IASLGASLGM ATVAEGVETE
DQLARVAADG CTDVQGYLIS RPIPPGEIEH FLAESRNVID AATEVSL
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