| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0516 |
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| Symbol | |
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| ID | 6408165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 564272 |
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| End bp | 565441 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710428 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001989551 |
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| Protein GI | 192288946 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAC CGGCGCTAAA ATTTCCGACC GAGCAGCAGG AGCCTGCGGC GGATCCGGCC
GTCGCCACGA GTGGCGGACC GCGCCGCGGT ATCGGCGGCA CGCTGCGTCG CTATCGGCGG
CCGCTGCTGC TGATCGTTCT GCCGCTGGTG GCACTGATCG GCGGCGTCAC CTTCTATCTG
GAGGGCGGCC GCTACGTTAC CACCGACGAC GCTTATGTCG GCGCCCAGAA GGTGCTGATC
ACGCCGGACG TCGCCGGCAA GATCGTCGAA GTGACCGTCA AGGAAGGCCA ACGCGTCCAA
CCCGGTGACG AGCTGTTCCA GATCGATCCG GTGCCGTTCC GCCTCGCGGT GGCGCAGGCC
CAGGCCAAGC TCGCCGACGC CAAGACCAGC CACGCCAATC TGGTCGCCAA CGTCAAGCTG
TACGGCCAGA CCATCGACCT GGTGAACGCC GGCATCGCGC TGAAGCAGCG CGACGTCGAG
CGCAAGACGT CGCTGGTGCA GAGCCGCGCC GGTTCGCAGC TCGACCTCGA CAACTCCACC
GCCGCGCTGG TGACCGCGCA AGCGCAGCTG CAGCTCGTCA AGCAGCAGCA GTCGACCGCG
CTCAATCAGT TGCTCGGCGA TCCCGAACTG CCGCTGGAGA AATTCCCCGC CTATGCCCAG
GCCAAGGCGG CGCTCGACGA CGCCGAACGT AACCTGCGGC TGTCCACCGT GCGGGCGCCG
ATGAGCGGCA CCGCCACCCA GGTCGACAAC ATCCAGCTCG GCCGCTTCGT CGCCGCCGGC
ACGCCGGTGT TCAGCGTGAT CGACACCACG CAGCCATGGG TCGACGCCAA TCCTAAGGAA
AGCGACTTCA CCTATGTGGC GGTGGGCCAG ACCGTGACGC TCGATGTCGA CGCCTTCCCG
GATCATCAGT TCAAGGGCCG GGTGTCGTCG CTGTCGCCGG GCACTGGCGC GCAATTCGCC
GTGCTGCCGC CGCAGAACGC TACCGGCAAC TTCGTCAAGG TAGTGCAGCG CGTGCCGCTG
CGGATCGCGC TCGACGAGAC CGATCCGATG ATCAAGCGGC TGAAGGCCGG CATGAGCGTC
AACGTCGCGA TCGACACCCA CCACCGCCGT TCGTTGGCCG GCCTGCTCGG CTTCGGCCAC
GCCGCAGCTG CAACGCCGGA GCACAACTAA
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| Protein sequence | MAEPALKFPT EQQEPAADPA VATSGGPRRG IGGTLRRYRR PLLLIVLPLV ALIGGVTFYL
EGGRYVTTDD AYVGAQKVLI TPDVAGKIVE VTVKEGQRVQ PGDELFQIDP VPFRLAVAQA
QAKLADAKTS HANLVANVKL YGQTIDLVNA GIALKQRDVE RKTSLVQSRA GSQLDLDNST
AALVTAQAQL QLVKQQQSTA LNQLLGDPEL PLEKFPAYAQ AKAALDDAER NLRLSTVRAP
MSGTATQVDN IQLGRFVAAG TPVFSVIDTT QPWVDANPKE SDFTYVAVGQ TVTLDVDAFP
DHQFKGRVSS LSPGTGAQFA VLPPQNATGN FVKVVQRVPL RIALDETDPM IKRLKAGMSV
NVAIDTHHRR SLAGLLGFGH AAAATPEHN
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