Gene Rpal_0504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0504 
SymbolaroB 
ID6408153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp547256 
End bp548401 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content68% 
IMG OID642710416 
Product3-dehydroquinate synthase 
Protein accessionYP_001989539 
Protein GI192288934 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCCC CGCAGAAACA CTCCGCTCCG ATCACCGTCG AAGTCGCCCT CGGCGACCGC 
GCCTATGAGA TCGTGATCGG CCGCGACGTG ATCGCCTCGC TGGGCGAGCG GATCGCCAAG
CTGCGGCCCG GCGCACGCAC CGCGATCGTC ACCGATCGCA CCGTGGCGAA GACCTGGCTG
AAGCGCACCG AGGAGGTGCT GGATCAGGTC GGCATCGCGC ATGCGTCGGT GATCGTCGGC
GAAGGCGAAA GCTCCAAAAG CTATGCGGGG CTCGAGCAGG TGTGCGAGGC GCTGATCGCC
GCCAAGATCG AGCGCAACGA TCTGGTGATC GCGCTCGGCG GCGGCGTGAT CGGCGATCTT
GCCGGTTTCT CGGCCTCGCT GCTGCGCCGC GGCGTCGATT TCGTGCAGGT GCCGACCTCG
CTGCTGGCGC AGGTCGACTC CTCGGTCGGC GGCAAGACCG GCATCAACTC GCCGCAGGGC
AAGAATCTGA TCGGCACGTT CCATCAGCCG GTGCTGGTCT TGGCCGACAC CGCGATCCTC
GACACCCTGT CGCCGCGCCA ATTCCGCGCC GGCTACGCCG AAGTCGCGAA ATATGGCGCG
CTCGGTGACG AAGCGTTCTT CGCCTGGCTC GAAGCCAACC ATGCCGAGCT GTTCAGCGGC
GGCGCCGCGC GCGAGCACGC GGTGGCCACC TCATGCCGAG CCAAGGCCGC GATCGTCGCC
CGCGACGAAC GCGAGACCGG AGACCGCGCG CTGCTCAATC TCGGTCACAC CTTCGGCCAT
GCGCTGGAAG CAGCGACCGG GTTCTCCGAC CGGCTGTTCC ACGGCGAGGG CGTGGCGATC
GGCATGGTGC TGGCGGCGGA ATTCTCGGCC GAGCGCGGCA TGATGCCGGC AGCCGACGCG
CAGCGGCTAG CCAAGCACCT CGCCGACGTC GGCCTGCCGA CCCGGCTGCA GGACATCGCC
GGCTTCACCC AGGAAGGCCT TGCCGACGCC GACCGCCTGA TGGCGCTGAT GTCGCAGGAC
AAGAAGGTCA AGCGCGGCGA ACTCACCTTC ATCCTGATGG AAGGCATCGG CCGCGCGGTG
ATCGCCAACA AGGTCGAGCC GGCGCCGGTG CGCGACTTCC TGCAGCGGAA ACTGGCGCAA
GCCTAA
 
Protein sequence
MNAPQKHSAP ITVEVALGDR AYEIVIGRDV IASLGERIAK LRPGARTAIV TDRTVAKTWL 
KRTEEVLDQV GIAHASVIVG EGESSKSYAG LEQVCEALIA AKIERNDLVI ALGGGVIGDL
AGFSASLLRR GVDFVQVPTS LLAQVDSSVG GKTGINSPQG KNLIGTFHQP VLVLADTAIL
DTLSPRQFRA GYAEVAKYGA LGDEAFFAWL EANHAELFSG GAAREHAVAT SCRAKAAIVA
RDERETGDRA LLNLGHTFGH ALEAATGFSD RLFHGEGVAI GMVLAAEFSA ERGMMPAADA
QRLAKHLADV GLPTRLQDIA GFTQEGLADA DRLMALMSQD KKVKRGELTF ILMEGIGRAV
IANKVEPAPV RDFLQRKLAQ A