Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0497 |
Symbol | |
ID | 6408146 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 540522 |
End bp | 542426 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642710409 |
Product | cobalt chelatase, pCobT subunit |
Protein accession | YP_001989532 |
Protein GI | 192288927 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4547] Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) |
TIGRFAM ID | [TIGR01651] cobaltochelatase, CobT subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCACCA CGACCAACAG CAAACTCCGC ACCGGATCGA AGGAAGCGCC GACCGAGCCG TTCAAGCGCG CCGTGACCTC GTGCCTGCGC GCCATCGCCA AGGCGCCGGA GCTGGAGGTT ACTTTCGCAG CCGAGCGCCC CGGCCTCGCG CCCGGCAAGG CCCGGCTCCC CGAGCCGGCG CGCAAGATGA GCAAGCGCGA CGCCGCGATT GTGCGCGGCC ATGCCGACTC GATCGCGCTG AAGCTCGCCT GTCACGACCC GAAAGTGCAT CGCAAGCTGA TGCCGGGTAA TCCGCAGGCC CGCGGCGTGT TCGAAGCGGT CGAGCAGGCG CGCGTCGAAG CGCTCGGCGC GCGGCGGATG GCGGGCGTCG CCAAGAACCT CACCGCGATG CTCGACGATC ATTTCCATCG CGGCAAGTTC GACGAGATCA CCGACCGCGC GGATGCGCCG CTGTCGGATG CGCTGGCTAT GCTGGTGCGC GAGCGGCTGA CGGGTCTGGC GCCGCCCACG GCGGCCAAGA AACTGGTCGA CCTGTGGCGG CCGGTGCTCG AAGACAAGCT CGGTCCGCGG CTCGATCAGC TCGAACACTT CGCCGACAAC CAGGCCAAGT TCGGCGACGT GATCCACGAC ATGCTCGACG CACTCGAGCT TGGCGATGAT CGCGACACCG AGACCGACGA AGACGAGAGC CAGGACGATA AGCAGGAAGG CGAGAACGAT CAGTCCGGCG CCGAGGGCGA GCCGCAGGGC GAAGCCGCGC AGGAGATGAG CGCCGAGCAG GCCGAAGCGA CCAGCGACGA GGTCAGCGAC AGCCAGATGG AAAGCGCCCA GGCATCGACC TCCGACGCCT TCGACGATTC CGAACTCGGC GAGGACGAAA CGCCGGGCGA AGCCACCCGT CCGCACAATC GCGGCGCCAA CGAGCCGCGC GGGCCGGAGT ATCACGCCTT CGCGCCGAAG TTCGACGAAA TCGTCGCCGC CGAAGATTTG TGCGACCACG ACGAACTGGA ACGGCTGCGC AGCTATCTGG ACAAGCAGTT GGCGCATCTG CAGGGGATCG TCGCCCGCCT CGCCAACCGG CTGCAGCGCC GGCTGATGGC GCAGCAGAAC CGCGCCTGGG ACTTCGACCT CGAAGAAGGC ATTCTCGATC CGGCGCGCCT GTCACGCGTG GTGATCGATC CGTTCCATCC GCTGTCGTTC ATGAGCGAGA AGGAAGCGAC CTTCCGCGAC ACCGTAGTGA CGCTGCTGCT CGACAATTCC GGTTCGATGC GCGGTCGCCC GATCACGGTG GCGGCGACCT GCGCCGACAT TCTGGCGCGG ACGCTGGAGC GTTGCGGCGT CAAGGTCGAG ATCCTCGGCT TCACCACGCG CGCCTGGAAG GGCGGACAAT CGCGCGAGGC TTGGCTCGCC GCCGGCAAGC CGGCCAATCC GGGCCGCCTC AACGATCTCC GGCATATCAT CTACAAGTCG GCGGACGCGC CGTGGCGCCG GGCTCGCAAG AACCTCGGGC TGATGATGCG CGAGGGCCTG CTCAAGGAGA ACATCGACGG CGAAGCGCTC GACTGGGCGC ATAAGCGTCT GCTCGGCCGC CCCGAGCAGC GCAAGATCCT GATGATGATC TCGGACGGCG CCCCGGTCGA CGACTCGACG CTGTCGGTCA ATCCCGGCAA CTACCTCGAA CGGCACCTGC GCCACATCAT CGAGGAGATC GAGACCCGCT CGCCGGTGGA GCTGATCGCG ATCGGCATCG GCCACGACGT GACGCGCTAC TATCGTCGCG CCGTGACCAT CGTCGACGCC GAAGAGCTCG GCGGCGCCAT CACCGAGAAG CTCGCCGAGC TGTTCAGCGA GACCGCCACC CCGGCCGCGA CACCGGGCCC GCGACGCCAC CGTCTGCATT CGTGA
|
Protein sequence | MSTTTNSKLR TGSKEAPTEP FKRAVTSCLR AIAKAPELEV TFAAERPGLA PGKARLPEPA RKMSKRDAAI VRGHADSIAL KLACHDPKVH RKLMPGNPQA RGVFEAVEQA RVEALGARRM AGVAKNLTAM LDDHFHRGKF DEITDRADAP LSDALAMLVR ERLTGLAPPT AAKKLVDLWR PVLEDKLGPR LDQLEHFADN QAKFGDVIHD MLDALELGDD RDTETDEDES QDDKQEGEND QSGAEGEPQG EAAQEMSAEQ AEATSDEVSD SQMESAQAST SDAFDDSELG EDETPGEATR PHNRGANEPR GPEYHAFAPK FDEIVAAEDL CDHDELERLR SYLDKQLAHL QGIVARLANR LQRRLMAQQN RAWDFDLEEG ILDPARLSRV VIDPFHPLSF MSEKEATFRD TVVTLLLDNS GSMRGRPITV AATCADILAR TLERCGVKVE ILGFTTRAWK GGQSREAWLA AGKPANPGRL NDLRHIIYKS ADAPWRRARK NLGLMMREGL LKENIDGEAL DWAHKRLLGR PEQRKILMMI SDGAPVDDST LSVNPGNYLE RHLRHIIEEI ETRSPVELIA IGIGHDVTRY YRRAVTIVDA EELGGAITEK LAELFSETAT PAATPGPRRH RLHS
|
| |