Gene Rpal_0487 details

Gene Information

• Locus tag: Rpal_0487
• ID: 6408136
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 526207
• End bp: 526995
• Gene Length: 789 bp
• Protein Length: 262 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 642710399
• Product: nuclease (SNase domain protein)
• Protein accession: YP_001989522
• Protein GI: 192288917

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.936462
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATTTC GGCGAAACGA CGCCCGGTGG CTGACCGCGA TCTGCGGTGG TGCTGCGCTG 
CTGATGCAGG CTGGTGATGC TGTGGCGGCC GGCTGTATGG ATTTGCCGGC GCAGGGAGAG 
GGCGTAGTGG CGTCGGTGAT CGATCCGCGC ACGCTGCGGC TCACCGACGG CCGCGAGATC 
CGGCTCACCG GAATCGAGCC CGCCCGCGAA CAACATGATG CGGAGGTCGC GGCCTTGTCG 
TCCCTGACTC TCGGCCGACG GGTGTCGCTG CATGGCGCCG ACGACGGACC GGACCGCTAC 
GGCCGGCAAT TGGCCTTCGT GGGAACGGAG CCGGGCGCGG AGTTGGTGCA GCGCCGGCTG 
CTGGCAGGCG GTGGTGCACT GGTAGGGATC GACGCCATGC CGGCGGAGTG CCGGCAGGAA 
TTGCTGGCGG CTGAGGCCGG CGCCCGCGCT GCGGCGGTCG GTATCTGGAT GGCGAGGGAT 
GTCATAAAAA ACGCCGCAAA TTCCGGCGAT ATGGTGACCC GGATAGGGCG CTTTACCGTG 
ATCGAAGGCC GAATCACCTC GGTGCGGGAG GTCGGTTCGA CGGTCTATTT GAACTTTGGC 
GGTCGCTGGA CTCGTGGCTT TGCGGTGACT ATTTCAAGGC GCATCGTCGG GTTGTTCGAG 
GCCGCCGGGC TCGCACCCAA GTCTCTGACA GGACAACGAA TTCGGGTGCG CGGCTGGGTC 
GAGAAGCGGG CCGGGGCGAG CATGGCGGTG CGCGACGTGG GACAGATCGA ACGAGCGGGC 
GGGGACTGA 

 

Protein sequence

MAFRRNDARW LTAICGGAAL LMQAGDAVAA GCMDLPAQGE GVVASVIDPR TLRLTDGREI 
RLTGIEPARE QHDAEVAALS SLTLGRRVSL HGADDGPDRY GRQLAFVGTE PGAELVQRRL 
LAGGGALVGI DAMPAECRQE LLAAEAGARA AAVGIWMARD VIKNAANSGD MVTRIGRFTV 
IEGRITSVRE VGSTVYLNFG GRWTRGFAVT ISRRIVGLFE AAGLAPKSLT GQRIRVRGWV 
EKRAGASMAV RDVGQIERAG GD