Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0436 |
Symbol | |
ID | 6408084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 468727 |
End bp | 470895 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642710348 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_001989472 |
Protein GI | 192288867 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAATA TCCATTCCGT GGAAATCGAT TGGGGTGGCC GTCCCCTCAA GCTTGAAACC GGCAAGGTCG CCCGCCAGGC CGACGGCGCC GTCGTCGCGA CCTATGGCGA GACCGTCGTG CTCGCCACAG TGGTGGCCGC CAAGTCGCCC CGTGAAGGCG TCGACTTCCT CCCCCTCACC GTCGACTACC AAGAAAAGGC CTACGCGGCC GGCCGCATTC CCGGCGGCTA TTTCAAGCGT GAAGGCCGTC CGACCGAGAA GGAGACTCTG GTCTCCCGTC TGATCGACCG CCCGATCCGT CCGCTGTTCG CCGACGGCTG GCGCAACGAA ACCCAGGTCA TCGTCACCGT TCTGTCGCAC GACATGGAGA ACGATCCGGA CGTGCTGGCG ATGGTCGCCG CCTCCGCGGC GCTGACGCTG TCCGGCGTGC CGTTCAAGGG TCCGATCGGC GCCGCCCGCG TCGGCTTCAT CAACGACGAA TACGTGCTCA ATCCCGTGCT CGACGAGATG GCCGAAACCC AGCTTGAGCT GGTGGTTGCC GGTACCGCCG ACGCGGTGCT GATGGTCGAA TCCGAAGCCA AGGAGCTGTC GGAAGAGATC ATGCTCGGCG CGGTGATGTT CGGTCACCGC CACTTCCAGC CGGTGATCGA TGCGATCATC GACCTCGCCG AGAAGGCCGC CAAGGAGCCG CGCGAACTCA CCGTCGTCGA CGACAGCGAG ATCGAAAAGG AAATGCTCGG CCTGGTCGAG CAGGAGCTGC GTGCCGCCTA CGCCATCCCG GTCAAGCAGG ACCGCTACGC CGCGGTCGGC AAGGTCAAGG AGAAGGCGAT TGCGCACTTC TTCCCGGAAG GCCAGGAGCC GAAATACGAC AAGCTGCGCA TCGCCGGCGT GTTCAAGGAG CTCGAGGCCA AGATCGTTCG CTGGAACATC CTCGACACCG GCAAGCGCAT CGACGGCCGT GACTCAAAGA CCGTCCGCAA CATCCTGGCT CAGGTCGGCG TGCTGCCGCG CACCCACGGT TCGGCGCTGT TCACCCGCGG TGAGACCCAG GCGCTGGTCG TGACCACGCT CGGCACCGGC GAAGACGAGC AGTATGTCGA CTCGCTGTCG GGAACGTACA AAGAGACGTT CCTGCTGCAC TACAACTTCC CGCCCTACTC GGTCGGTGAG ACCGGTCGCC TCGGTGGTAC CAAGCGCCGC GAGATCGGCC ACGGCAAGCT GGCGTGGCGC GCGATCCATC CGGTGCTGCC GCCGCATCAC GAGTTCCCCT ACACCATCCG CGTCGTCTCC GAGATCACCG AGTCGAACGG CTCGTCCTCG ATGGCGTCGG TGTGCGGCGC CTCGCTGGCG CTGATGGACG CGGGCGTGCC GCTGAAGCGG CCGACCGCGG GTATCGCGAT GGGCCTGATC CTGGAAGGTG AGCGCTTCGC CGTGCTGTCC GACATCCTCG GCGACGAGGA CCACCTCGGC GACATGGACT TCAAGGTGGC CGGCACCGAG CAGGGCATCA CCTCGCTGCA GATGGACATC AAGATCGCCG GCATCACCGA AGAGATCATG AAGGTGGCGC TCGGCCAGGC CAAGGACGGT CGCATCCACA TCCTGGGTGA GATGTCCAAG GCGCTCGACC GCGCCCGCGC CGAGCTCGGC GAACACGCGC CGCGCATCGA GACCTTCAAG ATCCCGACCG ACAAGATCCG CGAAGTGATC GGCACCGGCG GCAAGGTGAT CCGCGAGATC GTCGAGAAGA CCGGCGCCAA GGTCAACATC GAGGACGACG GCACCGTCAA GGTCGCCTCC AGCGATGGTG AGTCGATCAA GGCTGCTATC AAGTGGATCA AGTCGATCGC CTCCGATCCG GAGATCGGCG AGATCTACGA GGGCACCGTC GTCAAGGTGA TGGAGTTCGG CGCCTTCGTG AACTTCTTCG GCGCCAAGGA CGGCCTGGTA CACATCAGCC AGCTCGCCGC CGGCCGCGTG CAGAAGACCT CCGACGTCGT CAAGGAAGGC GACAAGGTCA AGGTCAAGCT GCTCGGCTTC GACGACCGCG GCAAGACCCG GCTGTCGATG AAGGTGGTCG ATCAGACCAC CGGTGAAGAC CTCGAAGCCA AGCAGAAGGC GGAAGCCAAG GCCGAAGGCG AAGCGCCCGC GCAGGCTGCC GGCGAGTAA
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Protein sequence | MFNIHSVEID WGGRPLKLET GKVARQADGA VVATYGETVV LATVVAAKSP REGVDFLPLT VDYQEKAYAA GRIPGGYFKR EGRPTEKETL VSRLIDRPIR PLFADGWRNE TQVIVTVLSH DMENDPDVLA MVAASAALTL SGVPFKGPIG AARVGFINDE YVLNPVLDEM AETQLELVVA GTADAVLMVE SEAKELSEEI MLGAVMFGHR HFQPVIDAII DLAEKAAKEP RELTVVDDSE IEKEMLGLVE QELRAAYAIP VKQDRYAAVG KVKEKAIAHF FPEGQEPKYD KLRIAGVFKE LEAKIVRWNI LDTGKRIDGR DSKTVRNILA QVGVLPRTHG SALFTRGETQ ALVVTTLGTG EDEQYVDSLS GTYKETFLLH YNFPPYSVGE TGRLGGTKRR EIGHGKLAWR AIHPVLPPHH EFPYTIRVVS EITESNGSSS MASVCGASLA LMDAGVPLKR PTAGIAMGLI LEGERFAVLS DILGDEDHLG DMDFKVAGTE QGITSLQMDI KIAGITEEIM KVALGQAKDG RIHILGEMSK ALDRARAELG EHAPRIETFK IPTDKIREVI GTGGKVIREI VEKTGAKVNI EDDGTVKVAS SDGESIKAAI KWIKSIASDP EIGEIYEGTV VKVMEFGAFV NFFGAKDGLV HISQLAAGRV QKTSDVVKEG DKVKVKLLGF DDRGKTRLSM KVVDQTTGED LEAKQKAEAK AEGEAPAQAA GE
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