Gene Rpal_0412 details

Gene Information

• Locus tag: Rpal_0412
• ID: 6408059
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 443110
• End bp: 444933
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642710323
• Product: GTP-binding protein TypA
• Protein accession: YP_001989448
• Protein GI: 192288843
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCTCC GTAACATCGC CATTATCGCC CACGTCGACC ACGGCAAGAC CACTCTTGTC 
GACAAACTGC TGCAGCAGTC CGGCACCTAT CGCGACAACC AGCGCCAGGT CGAACGGGCG 
ATGGACTCCA ACGATCTCGA ACGCGAACGT GGCATCACCA TTCTGGCGAA GTGTACTTCG 
GTGGTCTGGG GCGACACCCA CATCAACATC GTCGACACAC CCGGCCACGC CGACTTCGGC 
GGCGAAGTCG AGCGTATCCT GTCGATGGTC GACGGCGTGA TCGTGCTGGT CGACGCTGCC 
GAGGGCCCGA TGCCGCAGAC CAAGTTCGTG GTCGGCAAGG CGCTGAAGCT TGGCCTCAAG 
CCGATCGTTG CGATCAACAA GGTCGACCGC TCCGACGCCC GCGTCACCGA AGTGGTCAAC 
GAGGTGTTCG ACCTGTTCGC CGCGCTCGAC GCCACCGACG AGCAGCTCGA CTTCCCGATC 
CTGTACGGCT CCGGCAAGAA CGGCTGGATG TCGGACAAGC CGGACGGCGA TCCGAGCGAA 
GGCATGAAGC CGCTGTTCGA GCTGGTGCTC AAGCACGTTC ATCCGCCGGT GGTGGAAGAA 
GGTCCGTTCC GCCTGCTCGG CACCATCCTC GAAGCCAATC CCTATCTCGG CCGCATCATC 
ACCGGCCGCA TCGCGTCGGG CTCGGTGAAG CCGAACCAGG CCGTCAAGGT GCTGTCGCGC 
GACGGCAAGC TGGTCGAGCA GGGCCGCATC AGCAAGATCC TCGCCTTCCG CGGCCTCGAG 
CGCGTGCCGC TCGATATCGC CGAAGCCGGT GACATCGTGG CGATCGCCGG CCTGACCAAG 
GGGACCGTCG CCGACACCTT CTGCGATCCG GCGGTCGATA CCCCGATCCA GGCCCAGGCG 
ATCGATCCGC CGACCGTGTC GATGTCGTTC ATCGTCAACA ACTCGCCGCT TGCCGGCACC 
GAAGGCGACA AGGTCACCAG CCGCCTGATC CGCGACCGCC TGCTCCGCGA GGCCGAGGGC 
AACGTCGCGC TGCGCGTGGT CGAATCCGCC GACAAGGACG CGATGGAAGT GTCGGGCCGC 
GGCGAATTGC AGCTCGCGAT CCTGATCGAG AACATGCGCC GTGAAGGTTT CGAACTCAGC 
GTGTCGCGTC CGCGCGTCGT GCTGACCCGC GACGAGAACG GCCAGCTGCT CGAGCCGGTC 
GAGGAAGTCG TGATCGACGT CGACGAGGAA TTCTCCGGCG TCGTCGTGCA GAAGATGAGC 
GAACGCAAGG CTGAGATGAT CGAGATGCGG CCGTCGGGCG GCAATCGGCT GCGGCTGGTG 
TTCTACGCGC CGACCCGCGG CCTGATCGGC TACCAGGGCG AACTGATGAC CGACACCAAG 
GGCACGGCCA TCATGAACCG GCTGTTCCAC AACTACCTGC CGTATCGCGG CGAGATCCAG 
GGCCGCCGCA ACGGCGTGCT GATCTCCAAC GATCAGGGCG AGGCGGTCGC CTACGCGATG 
TTCAAGCTGG AAGATCGCGG CCCGATGATG ATCGAGCCGG GCTGGAAGGT CTACAAGGGC 
ATGATCGTCG GTGAGCACAC CCGCGACAAC GATCTCGAGA TCAACGTCCT CAAGGGCAAG 
CAGCTCACCA ACATCCGTAC CACCTCGAAG GACGAAGCGG TGCGCCTGAC GCCGCCGATC 
CGGATGACGC TGGAAAAGGC GCTGGCCTAT ATCGAAGACG ACGAGCTGGT CGAGATCACG 
CCGAAGTCGA TCCGGCTGCG CAAGCGCCTG CTCGACCCCA ACGAGCGCAA GCGCGCCGAG 
AAGAGCAAGC AGGCGGTCGC CTGA 

 

Protein sequence

MTLRNIAIIA HVDHGKTTLV DKLLQQSGTY RDNQRQVERA MDSNDLERER GITILAKCTS 
VVWGDTHINI VDTPGHADFG GEVERILSMV DGVIVLVDAA EGPMPQTKFV VGKALKLGLK 
PIVAINKVDR SDARVTEVVN EVFDLFAALD ATDEQLDFPI LYGSGKNGWM SDKPDGDPSE 
GMKPLFELVL KHVHPPVVEE GPFRLLGTIL EANPYLGRII TGRIASGSVK PNQAVKVLSR 
DGKLVEQGRI SKILAFRGLE RVPLDIAEAG DIVAIAGLTK GTVADTFCDP AVDTPIQAQA 
IDPPTVSMSF IVNNSPLAGT EGDKVTSRLI RDRLLREAEG NVALRVVESA DKDAMEVSGR 
GELQLAILIE NMRREGFELS VSRPRVVLTR DENGQLLEPV EEVVIDVDEE FSGVVVQKMS 
ERKAEMIEMR PSGGNRLRLV FYAPTRGLIG YQGELMTDTK GTAIMNRLFH NYLPYRGEIQ 
GRRNGVLISN DQGEAVAYAM FKLEDRGPMM IEPGWKVYKG MIVGEHTRDN DLEINVLKGK 
QLTNIRTTSK DEAVRLTPPI RMTLEKALAY IEDDELVEIT PKSIRLRKRL LDPNERKRAE 
KSKQAVA