Gene Rpal_0406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0406 
Symbol 
ID6408053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp435666 
End bp436286 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content67% 
IMG OID642710317 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001989442 
Protein GI192288837 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0181245 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAAC AACAAGAACC AGCGGACGAC GCGCGCCGCG CCGCGATCCT GCAGGCGGCC 
TTCGATGTTT TCGTCGAAAA GGGGTTCGAG GCGGCGACCA CCGCCGAGAT CGTCCGCCGG 
GCCCGGACCT CAAAGCGGAC GCTGTACGAG TTCTTCGCCA GCAAGCAGGA GATCCTGACG 
GCGCTGATCC GCTATGGCGC TGCCAAGATG CAGCCATCGC CGGAGCTCCC CGAGCCACAA 
AACCGGCAGC AGTTTCTCGT CGTGCTGGAG CAGTTCGGCC GGATCTTCCT TAGCGAGCTC 
CTGCATCCCG AGCGGACCGC GATGTATCGG CTCGCGATCG CCGAGGCGGC GCGCGGCGGT 
GGTTCGGTCG CACGAGAGCT GGAAGCCAGC GGTCGGGTGC CGGTGACGCA AGCCGCGACC 
CGGTTCTTCG AGCAGGCTGC TGCTCGCGGC ATCATTCGCC GCGAGCAGGT CGCGACGCTG 
ATCAGCGTGT TCTTTTCGGT GCTGATCGGC ATCACGCCGC TGCAGGTGCT GCTCGGTGAG 
CCGCCGATCG GCGCGGATGC GATTGCGCAG CGGGCAGCGC TGGCGACGCA GGTGCTGGCG 
CGGATGATCG AGCCGGCCTG A
 
Protein sequence
MEKQQEPADD ARRAAILQAA FDVFVEKGFE AATTAEIVRR ARTSKRTLYE FFASKQEILT 
ALIRYGAAKM QPSPELPEPQ NRQQFLVVLE QFGRIFLSEL LHPERTAMYR LAIAEAARGG 
GSVARELEAS GRVPVTQAAT RFFEQAAARG IIRREQVATL ISVFFSVLIG ITPLQVLLGE 
PPIGADAIAQ RAALATQVLA RMIEPA