| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0381 |
|---|
| Symbol | |
|---|
| ID | 6408028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 404689 |
|---|
| End bp | 405513 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642710292 |
|---|
| Product | UspA domain protein |
|---|
| Protein accession | YP_001989417 |
|---|
| Protein GI | 192288812 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0466978 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGG ATCTCATCGT CAATCTCGAA CGTAGCAAGG ATCGCCAGCA GATCACCGAC
ATTGCGCTCG GCGTCGCCGA GCTGTTCGGC GCCCATGTGG CCGGCTGCTG CTTCGCCTAT
GATTCGCTGC CGAGCTTCAC GATGCCGGAC TTTCCGTCAG ACCTGCTGAG CAAAATGCTG
GCGGCGAGCG AAGAAGCGGC GCGCGCCGCG GTCGCCCAAT TCGAAACCGC CTGCAAACGC
GAGGGCGTCT CGGCCGAGCA TCATCTGCTC GAGACCGCCT ATGGCACCTC GGGACGTTTC
CCGAAGATGG CGCGCCGGTT CGATCTGTCG GTGATCATGC AGTCGGATGC CGAGAACGGC
GACAACGACA TTCTGATCGA GCAGGTGCTG TTCGATTCGG GTCGGCCGCT GTTGATCGTG
CCTTACATCC AGAAGACTCC GGTCAAGCTC GATCGCGTGA TCTGCTGCTG GGACGGCAGC
CGCGCCGCGA CCCGCGCCAT CAACGACGCC AAGCCGTTCC TGCGCCGCGC CGGACAGGTC
GAACTGGTGA TCGTGCGTGA TCACAAGGTG CGCGATCCCA ATGAGCTGCG CGGCATCGAG
ATGGCCAATC ACTTGGCGCG CTATGACGTC AAGGTCGACA TCAAGACCAT CACGGCGCCC
GATATCGGCG TCTCCGGCAC GATCTTGTCG CATGTCGCCG ATACCTCGGC CGACCTCTTG
GTGATGGGCG GCTACGGCCA CTCCCGCCTG CGCGAGTTCG TGCTCGGCGG CGTCACCCGC
GAGATGCTGA CGTCGATGAC CGTGCCGGTG CTGATGTCGC ATTGA
|
|---|
| Protein sequence | MIKDLIVNLE RSKDRQQITD IALGVAELFG AHVAGCCFAY DSLPSFTMPD FPSDLLSKML
AASEEAARAA VAQFETACKR EGVSAEHHLL ETAYGTSGRF PKMARRFDLS VIMQSDAENG
DNDILIEQVL FDSGRPLLIV PYIQKTPVKL DRVICCWDGS RAATRAINDA KPFLRRAGQV
ELVIVRDHKV RDPNELRGIE MANHLARYDV KVDIKTITAP DIGVSGTILS HVADTSADLL
VMGGYGHSRL REFVLGGVTR EMLTSMTVPV LMSH
|
|---|
| |