| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0374 |
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| Symbol | |
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| ID | 6408021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 397224 |
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| End bp | 399746 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642710285 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001989410 |
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| Protein GI | 192288805 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGTTC GGGGAGTGTC ATTGCGGCAG CCATACCCAC GAGAACCGCG GGGATGGCAT
CAGGAGTGGT CGCTGCGTCG CGCGATGCGG ATGGCGCGCG CTGCGTATTG GGAGTCTTAC
AGCGCCGCCG CAACCGATTT CTGGATGTCG GCTGAATTCA CGTCGCTCTA CGATGCCGAG
ACGCCCGACG ATTCCGTTCC GCTCGCGCCG GCTCGTGACC ATGACCTCAC CGAAAGCCAC
GCGATTCTGC AGGATCACTA CGCCGCGTGC TGGACGGAGG GCCGGCCGTT TGCGGTGGAA
ACGAAACTGA TCAAGCCTGA TGGCCGTCTG CTCGATTGCG TCGTGCACGG CGAGCCGGAG
TTCGATGCGA ACGGTCAGGT CCAGCGGGTG TTCGGCATCG TCCGCGATGC AACTCCTGAA
ACATCTGCCC TCCGGCAACT CGCCGTGAGC GAACAGCGTC TGGCAGATTT CGTCAGCACC
GCGTCGGACT GGTGTTGGGA GTCCGGCCCC GACCATCGGT TGCTTCCCTA TCCGAAATCA
CTCGACGGCA ATGCGGCGCT GCAGACCGTC GCGTCCGGCG GAAAGGCGCG GTGGGAGCTC
GCTTATGCGC CCGACGAAGA AGGCTCCATG GCCCTGCACC GGGACGATAT GGAAGCCCAT
CGCCCGTTCC GTGACTTCAT CTACACATCG ATTGGCAACG ACGGCTCGCG GATCATTATT
TCGACCAGCG GCAAGCCGAT CTTTGCCGAT GACGGGACAT TCCTGGGCTA TCGCGGCACA
GCCAGCGACA TCACCCAGCT TGCGGCCGCC AGAACATTGC TCGACCAGCG CACCGGAGCG
TTGGAAGAGG CTCATCGGCT CGGCCGGATC GGGACCTGGA CTCATCGGCT CGACACCGGC
CGGACCGTGT GGTCGCCCGA ACTCTATCAG CTGCTTGGCC TGGAGCCCGA TGCGTTCGAA
CCGACCTATG AAGGCACAGA GCCTTATTTT CTGGACGATG ACGCCGTACG CCTGCTGAAG
ATCCAGAAGC GCGTTCTTCG CACCAGCACG ACGGAAGCCA CCGACATCCG GATTCTGCAC
ACCGACGGCG CGCCACGCGA TCTGGCCATC ATCTGCAAGG CCGAGATTTC GAACGGGAGG
GTCATCGGCC TGATCGGCAC CGCGCAAGAC GTCACCGATC GCAAGGAGGC CGAGCGCCGG
CTCGAGCAGC TTGCCTATAC GGACCCGCTG ACCGGCCTTG CTAATCGCGC CCTGTACAAA
CGCAAGCTCG CCGATCTGTT CGAGAACCCG ATGGCGGAGC ACGGCCAGAA CGCGCTGTAC
CTGATCGACC TCGATCGCTT CAAAGAGGTC AACGATTCCC TCGGCCATTC CACCGGCGAC
AGCTTGCTGA TTCACGTGGC GGGAGTGTTG CGACAGGAGC TGGGTCCGCA AGCCTTTATC
GCCCGGATCG GCGGCGACGA ATTTGCGGTG CTGACGAACT CTCCAAATAC GTCTGTCGAA
GCGACGACCG CCCTTGCGGA CCGGTTGATC GCGAAACTAT CGGTCCCGGT CGAGCTTGCC
GAAGGCGAGG CCTGCATCGG CGCCACCATC GGCATCGCCA TCTTGCCGGA GCATGGCGCA
ACCGCGGAGA AGGCCTCGCG CAATGCGGAT CTTGCGCTCT ATATGGCCAA AGAAGCCGGG
CGCGGCCGGG CGCAGCTGTT CGAGCCGATG TACGCCGAGG CGGTCGATCA GAAGCTCGAC
CTCGGCCGGC GTCTGCGCCA CGCCGTCGAC AGCGGCGGCC TCAACACGCA CTACCAGCCA
CAGATCGACC TCAAGACCGG TCGGGTCATC GGCTTCGAAG CGCTGCTGCG CTGGAGCCAT
CCCGAACGCG GGCCGATTTC ACCGGCGGAG TTCATTCCGA TCGCGGAAAC CACCGGCCTG
ATCGTCGACC TCGGCCATTG GGTGCTGCGC GATGCCTGCA AGCAGATGCG CGGCTGGCTC
GATGCCGGGC TGCCGGCCAG GACCATCTCG GTGAACGTGT CTCCCGCGCA AATCTGGAAC
GGCGATTTCG AGAAGGTGGT GGCCACCGTG CTGGCCGACA CCGGCCTGCC GCCGGAGCTG
CTGTGCCTGG AGCTGACCGA GAATCTGTTC GTCGATCATA CGAAGCAGAA AGTCAGCACG
ACGCTCGCCG CCTTGTCGAA GCTCGGCATC CAGCTCGCAC TCGATGATTT CGGCTCCGGC
TATTCGTCGC TCGGCTATCT GACGCGTCTG CCGTTCAATC GCCTGAAGAT CGACCGGACC
TTCGTCGAGG GCATCGCTAC CGTGCCCGAG AAGTGCAAGC TGCTCGGCGG CATCATCGCG
CTGGCGCACG GCCTCGGCAT GAGCGTGGTG GCCGAAGGCG CCGAACTGGC CGCCGAGGTC
GACCTGCTCA CCGCATTCGA CTGTGATTTC GTGCAGGGCT ACGTGTTCTC ACGGCCGGTC
GCAGCGGATC AGGCACCGGT GGTGGCGGCG GAGATTGAGC GGGGAGCCGG CTCGAATAAC
TGA
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| Protein sequence | MAVRGVSLRQ PYPREPRGWH QEWSLRRAMR MARAAYWESY SAAATDFWMS AEFTSLYDAE
TPDDSVPLAP ARDHDLTESH AILQDHYAAC WTEGRPFAVE TKLIKPDGRL LDCVVHGEPE
FDANGQVQRV FGIVRDATPE TSALRQLAVS EQRLADFVST ASDWCWESGP DHRLLPYPKS
LDGNAALQTV ASGGKARWEL AYAPDEEGSM ALHRDDMEAH RPFRDFIYTS IGNDGSRIII
STSGKPIFAD DGTFLGYRGT ASDITQLAAA RTLLDQRTGA LEEAHRLGRI GTWTHRLDTG
RTVWSPELYQ LLGLEPDAFE PTYEGTEPYF LDDDAVRLLK IQKRVLRTST TEATDIRILH
TDGAPRDLAI ICKAEISNGR VIGLIGTAQD VTDRKEAERR LEQLAYTDPL TGLANRALYK
RKLADLFENP MAEHGQNALY LIDLDRFKEV NDSLGHSTGD SLLIHVAGVL RQELGPQAFI
ARIGGDEFAV LTNSPNTSVE ATTALADRLI AKLSVPVELA EGEACIGATI GIAILPEHGA
TAEKASRNAD LALYMAKEAG RGRAQLFEPM YAEAVDQKLD LGRRLRHAVD SGGLNTHYQP
QIDLKTGRVI GFEALLRWSH PERGPISPAE FIPIAETTGL IVDLGHWVLR DACKQMRGWL
DAGLPARTIS VNVSPAQIWN GDFEKVVATV LADTGLPPEL LCLELTENLF VDHTKQKVST
TLAALSKLGI QLALDDFGSG YSSLGYLTRL PFNRLKIDRT FVEGIATVPE KCKLLGGIIA
LAHGLGMSVV AEGAELAAEV DLLTAFDCDF VQGYVFSRPV AADQAPVVAA EIERGAGSNN
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