Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0371 |
Symbol | |
ID | 6408017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 394333 |
End bp | 395232 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642710281 |
Product | RNA polymerase factor sigma-32 |
Protein accession | YP_001989407 |
Protein GI | 192288802 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.532177 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCCGTG CTGCTACTCT CCCGATTCTC AACGGAGAAT CCGGCCTTGC TCGCTACCTT GCGGAAATCC GCAAGTTTCC GATGCTCGAG CCTCAGCAAG AGTACATGCT CGCCAAGCGC TGGCGCGAAC ACGGTGATCG CGACGCGGCG CATCAACTCG TCACCAGCCA TCTTCGCCTC GTCGCCAAAA TCGCGATGGG CTACCGCGGC TATGGCCTGC CGATCTCCGA GGTCGTCTCG GAAGGCAACG TCGGCCTGAT GCAGGCGGTG AAGCGGTTCG AACCCGAGAA GGGCTTCCGC CTCGCCACCT ACGCGATGTG GTGGATCAAG GCGTCGATTC AAGAGTACAT CCTGCGTTCG TGGTCACTCG TGAAGATGGG TACCACCGCG AACCAGAAGA AGCTGTTCTT CAACCTGCGC AAGGCGAAGA GCAAGATCTC GGCGCTGGAC GAGGGCGATC TGCATCCCGA CCAGGTCAAG CTGATCGCCA CCCGGCTCGG GGTGACTGAG CAGGACGTGG TCGACATGAA TCGCCGCCTC GGCGGCGACG CTTCGCTCAA CGCGCCGATC CGCGACGACG GCGAGCCGGG CGAATGGCAG GACTGGCTGG TCGATCAGTC GCCGAGCCAG GAAGCGGTGA TGGCCGAGCA CGAAGAGCTC GACCAGCGCC GGGCCGCGCT CAACGGCGCG ATCCAGGTGC TGAACCCGCG CGAACGGCGG ATCTTCGAGG CCCGCCGCCT CGCCGACGAG CCGATGACGC TTGAAGACCT CGCCTCCGAA TTCGGCGTGT CGCGCGAGCG CGTGCGCCAG ATCGAAGTGC GGGCGTTCGA GAAGGTGCAG AGCGCCGTCA AGGGCACCAT CGCCCGCCAG GAACAGGCGG CGCTGGAAGC CGCGCACTGA
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Protein sequence | MARAATLPIL NGESGLARYL AEIRKFPMLE PQQEYMLAKR WREHGDRDAA HQLVTSHLRL VAKIAMGYRG YGLPISEVVS EGNVGLMQAV KRFEPEKGFR LATYAMWWIK ASIQEYILRS WSLVKMGTTA NQKKLFFNLR KAKSKISALD EGDLHPDQVK LIATRLGVTE QDVVDMNRRL GGDASLNAPI RDDGEPGEWQ DWLVDQSPSQ EAVMAEHEEL DQRRAALNGA IQVLNPRERR IFEARRLADE PMTLEDLASE FGVSRERVRQ IEVRAFEKVQ SAVKGTIARQ EQAALEAAH
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