Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0322 |
Symbol | |
ID | 6407968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 342378 |
End bp | 343034 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642710232 |
Product | putative autoinducer (acylhomoserine lactone) synthase |
Protein accession | YP_001989358 |
Protein GI | 192288753 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism [T] Signal transduction mechanisms |
COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.805046 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGGTTC ATGTCATCCG TCGGGAGAAC CGCGCGCTCT ATGCCGGTCT GCTCGAAAAG TACTTCCGCA TCCGTCACCA GATCTACGTC GTCGAGCGCG GCTGGAAGGA GCTCGATCGG CCGGATGGCC GCGAGATCGA TCAGTTCGAC ACCGAAGACG CCGTGTATCT GCTCGGCGTC GACAATGACG ACATCGTCGC CGGCATGCGG ATGGTGCCGA CCACGTCACC GACGCTCCTC AGCGACGTCT TCCCGCAGCT TGCGCTGGCC GGCCCGGTGC GGCGGCCGGA TGCCTACGAG CTGTCGCGGA TCTTCGTGGT ACCGCGCAAG CGCGGCGAGC ATGGCGGCCC GCGCGCAGAA GCCGTGATCC AGGCGGCAGC GATGGAGTAC GGCCTGTCGA TCGGTCTGTC GGCCTTCACC ATCGTGCTGG AGACCTGGTG GCTGCCGCGA CTGGTGGATC AGGGCTGGAA GGCCAAGCCG CTCGGCCTGC CCCAGGACAT CAACGGTTTC TCGACCACCG CGGTGATCGT CGACGTCGAC GACGACGCCT GGGTCGGCAT CTGCAATCGC CGCTCGGTGC CCGGACCCAC GCTGGAATGG CGCGGGCTCG AAGCCATCCG CCGTCATTCG CTTCCGGAAT TCCAGGTGAT TTCATGA
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Protein sequence | MQVHVIRREN RALYAGLLEK YFRIRHQIYV VERGWKELDR PDGREIDQFD TEDAVYLLGV DNDDIVAGMR MVPTTSPTLL SDVFPQLALA GPVRRPDAYE LSRIFVVPRK RGEHGGPRAE AVIQAAAMEY GLSIGLSAFT IVLETWWLPR LVDQGWKAKP LGLPQDINGF STTAVIVDVD DDAWVGICNR RSVPGPTLEW RGLEAIRRHS LPEFQVIS
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