Gene Rpal_0322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0322 
Symbol 
ID6407968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp342378 
End bp343034 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content66% 
IMG OID642710232 
Productputative autoinducer (acylhomoserine lactone) synthase 
Protein accessionYP_001989358 
Protein GI192288753 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms 
COG ID[COG3916] N-acyl-L-homoserine lactone synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.805046 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGTTC ATGTCATCCG TCGGGAGAAC CGCGCGCTCT ATGCCGGTCT GCTCGAAAAG 
TACTTCCGCA TCCGTCACCA GATCTACGTC GTCGAGCGCG GCTGGAAGGA GCTCGATCGG
CCGGATGGCC GCGAGATCGA TCAGTTCGAC ACCGAAGACG CCGTGTATCT GCTCGGCGTC
GACAATGACG ACATCGTCGC CGGCATGCGG ATGGTGCCGA CCACGTCACC GACGCTCCTC
AGCGACGTCT TCCCGCAGCT TGCGCTGGCC GGCCCGGTGC GGCGGCCGGA TGCCTACGAG
CTGTCGCGGA TCTTCGTGGT ACCGCGCAAG CGCGGCGAGC ATGGCGGCCC GCGCGCAGAA
GCCGTGATCC AGGCGGCAGC GATGGAGTAC GGCCTGTCGA TCGGTCTGTC GGCCTTCACC
ATCGTGCTGG AGACCTGGTG GCTGCCGCGA CTGGTGGATC AGGGCTGGAA GGCCAAGCCG
CTCGGCCTGC CCCAGGACAT CAACGGTTTC TCGACCACCG CGGTGATCGT CGACGTCGAC
GACGACGCCT GGGTCGGCAT CTGCAATCGC CGCTCGGTGC CCGGACCCAC GCTGGAATGG
CGCGGGCTCG AAGCCATCCG CCGTCATTCG CTTCCGGAAT TCCAGGTGAT TTCATGA
 
Protein sequence
MQVHVIRREN RALYAGLLEK YFRIRHQIYV VERGWKELDR PDGREIDQFD TEDAVYLLGV 
DNDDIVAGMR MVPTTSPTLL SDVFPQLALA GPVRRPDAYE LSRIFVVPRK RGEHGGPRAE
AVIQAAAMEY GLSIGLSAFT IVLETWWLPR LVDQGWKAKP LGLPQDINGF STTAVIVDVD
DDAWVGICNR RSVPGPTLEW RGLEAIRRHS LPEFQVIS