Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0297 |
Symbol | trmE |
ID | 6407943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 318978 |
End bp | 320303 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642710207 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_001989333 |
Protein GI | 192288728 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATCCGA GCGACCAGAC CATCTTCGCC CTTGCGACCG GACCGCTGCC GTCGGCAATC GCCATCCTGC GTGTCTCCGG ATCGCGAGCG GGCGACGTGC TGAGAGCGCT GACCGGATCA TTACCGCCGC CCCGGCGCGC GGTGCGCTGT GATCTTCGGA GCCGAGATGG CGATCTGATC GATGACGGCG TGGCGTTGTG GTTTCCGACG CCGGCGTCTG CCACCGGCGA AGATGTTGCC GAATTGCACA TCCACGGCAG CCGTGCGGTG GCGGCGGCGC TGATCAAGAC CCTCTCGGCA TTCGAAGGCG TGCGGCCGGC GGAGCCGGGC GAGTTCACCC GGCGTGGATT CGAAAACGGC AAGCTCGACC TGACCGAAGC CGAAGGCCTC GACGATCTGA TCCATGCGGA CACCGACGCG CAGCGGCGTC AGGCGCTGCG CCAGCTCGGC GGCGTGCTGG GCGACCGGGC GCGGCAATGG CGCGACCAGA TCATCGAGGC ACTGGCACTG GTCGAAGCGG GGATCGACTT TTCCGACGAA GGCGACGTTG CCGACGAGTT GATGGGGCCG GCGCGGGCGA AGATCGCAGA GCTGTCCGCA GAGATCGCCG AGGTCTTGGC CGAGCAGGGC CGGGGCGAAA AGCTCCGCGA CGGGATGGTG GTGGCGATCG CCGGGCCGCC GAACGTCGGC AAGTCCACTC TGATCAATCG CCTGGCGCGC CGCGAGGTGG CGATCGTCTC GCCGCATGCC GGCACCACCC GGGATGTGAT CGAAATCCAG CTCGATCTCG ACGGCTATCC GGTGACGGTG ATCGATACGG CGGGACTGCG AGACAGTGAC GATCCGGTCG AGCAGGAGGG CGTCCGCCGC GCTCGCTTGC GAGCCGCGGC GGCGGATCTG GTGCTGTGGC TGAGCACGGC GACGGACGCT TCTGATCCGG ATGTGAAAGG TCCGGAGGTC TGGCGGGTCC GGAATAAGAT CGATTTGGCG AACGGCGAGG TGGCAGAATC CGGCCCGTCA CAGCCCGTTT TCCGGATTTC GGCCGCGACC GGCGAGGGGT TTGCGGATTT GCTGCGCGAA CTGACGCGAT TTGCTGCGCA GTATTTCGGG TCCGCAGAAG CCGGATTGAT CACGCGCGAC CGCCATCGGC GGTTGCTCGC CGATGCTGCG GCATCGCTGA CACGCAGTCT CGTGCCGGGA CTGGCCGAAG AAATCGTCGC CGAAGAACTC CGCGCTTCGG CTCACAGTCT CGGCCGATTG CTCGGGCGGG TCGACGTCGA GGATGTCCTT GGTGAGATCT TCGGCCGGTT CTGCATTGGC AAATAG
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Protein sequence | MHPSDQTIFA LATGPLPSAI AILRVSGSRA GDVLRALTGS LPPPRRAVRC DLRSRDGDLI DDGVALWFPT PASATGEDVA ELHIHGSRAV AAALIKTLSA FEGVRPAEPG EFTRRGFENG KLDLTEAEGL DDLIHADTDA QRRQALRQLG GVLGDRARQW RDQIIEALAL VEAGIDFSDE GDVADELMGP ARAKIAELSA EIAEVLAEQG RGEKLRDGMV VAIAGPPNVG KSTLINRLAR REVAIVSPHA GTTRDVIEIQ LDLDGYPVTV IDTAGLRDSD DPVEQEGVRR ARLRAAAADL VLWLSTATDA SDPDVKGPEV WRVRNKIDLA NGEVAESGPS QPVFRISAAT GEGFADLLRE LTRFAAQYFG SAEAGLITRD RHRRLLADAA ASLTRSLVPG LAEEIVAEEL RASAHSLGRL LGRVDVEDVL GEIFGRFCIG K
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