Gene Rpal_0296 details

Gene Information

• Locus tag: Rpal_0296
• ID: 6407942
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 316944
• End bp: 318812
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642710206
• Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
• Protein accession: YP_001989332
• Protein GI: 192288727
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division
• TIGRFAM ID: [TIGR00136] glucose-inhibited division protein A

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCACCT CTTTCGACGT CATCGTCATC GGCGGCGGCC ATGCCGGCTG CGAAGCTGCG 
GCTGCGGCTG CCCGGATCGG CGCGGCTACC GCCCTCGTCA CCCATCGTTT CGCCACCGTA 
GGTGCGATGT CCTGCAATCC GGCGATCGGA GGGCTGGGCA AAGGTCATCT GGTCCGCGAA 
GTGGATGCCT TGGATGGGCT GATGGGCCGG GTCGCCGACG CCGGCGGCAT TCAGTTTCGG 
ATGCTGAACC GCCGTAAAGG CCCCGCGGTC CGCGGCCCGC GGGCGCAGGC TGATCGCAAG 
CTGTATGCGG CCGCGATGCA GATCGCGATC CAGGGCTTTC CGAATTTGTC GGTGATCGAA 
GGGGAGGCCG ACGCGCTGCT ATGGCAGGAC GGCCGTGTGA GCGGCATTCG GCTCGGCGAC 
GGCCGGGAGT TTGCTGCCGC GGCGGTCGTC ATTACGACCG GGACCTTTCT GCGCGGCCTC 
ATTCACCTCG GCGAGCGAAG CTGGCCCGCT GGCCGGATCG ACGAGGCCCC AGCGATGGGG 
CTTTCATCGT CGTTCGAAGC GCTCGGATTT AAGCTCGGTC GCCTCAAAAC CGGAACTCCG 
CCACGTCTGG ACGGCCGGAC AATCGACTGG AGCGCCGTCG AAATGCAGCC CGGCGATGAT 
CCGGCGGAAC CGTTTTCGGT CCTGACGCCG GCAATCACCA CGCCGCAGAT CGAATGCGGC 
ATCACCCGGA CGACGCCGGC CACCCATGAG GTGATCCGAG CCAATGTGCA TCGCTCGCCG 
ATGTATTCAG GACAGATCCA GTCGACTGGG CCGCGTTATT GCCCCTCGAT TGAGGACAAG 
ATCGTCAAAT TCGGCGATCG CGACGGCCAC CAGATCTTCC TGGAGCCGGA AGGGCTTGAT 
GATCCGACCG TCTATCCCAA CGGGATCTCA ACTTCGCTTC CCGAAGAGGT TCAGCGGGCA 
ATCCTGAAGA CCATTCCGGG GCTGGAGCGA ACCGAAATGC TCCGTCCGGG GTACGCGATT 
GAATACGATC ACGTCGACCC GCGGGAGTTG GAGCCGACGC TGCAGACCAA GCGGCTGCGC 
GGGCTGTTCC TGGCCGGGCA GATCAATGGC ACCACCGGTT ATGAAGAGGC GGCAGCCCAG 
GGTCTGGTCG CTGGGCTCAA TGCGGCATTG TCCGCGGGAG GTGGCGATCG GGCGGTGTTC 
GATCGCGCCG ACGGCTACCT CGGCGTGATG ATCGACGATC TGGTGACCCG CGGCATCACC 
GAGCCGTACC GGATGTTTAC CTCCCGGGCC GAGTATCGCC TGACCCTTCG GGCCGACAAC 
GCCGACCAGC GTCTGACCGA CAAGGGCCTA GCACTCGGTT GCGTCGGGGT GGAGCGGTCG 
GCCTTCCATC ATGACAAAAT GGCCGCACTT TCGGACGCGA AAGCGCTTGC CCAATCGCTG 
TCGATCACCC CGAACGAAGC AGCCAAGCAC GGACTGGCAC TGAACCGGGA TGGCCAGCGC 
CGCTCCGCGT TCGATCTGTT GTCCTATCCG GAAATCGAGT GGGCTCAGGT TCGCGCGATA 
TGGCCGGAGC TTGGAAAGGT CGATCCCGCG ATCGCGGTGC ATGTCGAGAT CGACGCCAAA 
TATCATGTCT ATCTGGAGCG CCAGACCGCA GACGTCGAGG CGTTTCGTCG GGATGAAAGT 
CTCGGGCTTA CCGATGTCGA TTACGCGGCG GTCCCCGGTC TGTCGAACGA GGCCCGCACG 
CGGCTGGAGC GGCATCGCCC ACACACCGTC GGGCAGGCGG GTCGGCTCGA CGGCATCACG 
CCAGCGGCCC TCGGAATTCT CGCCGCCTAT CTGCGGCGTG AACAACGGAA GCGGAAATCG 
ACGGGGTAG 

 

Protein sequence

MRTSFDVIVI GGGHAGCEAA AAAARIGAAT ALVTHRFATV GAMSCNPAIG GLGKGHLVRE 
VDALDGLMGR VADAGGIQFR MLNRRKGPAV RGPRAQADRK LYAAAMQIAI QGFPNLSVIE 
GEADALLWQD GRVSGIRLGD GREFAAAAVV ITTGTFLRGL IHLGERSWPA GRIDEAPAMG 
LSSSFEALGF KLGRLKTGTP PRLDGRTIDW SAVEMQPGDD PAEPFSVLTP AITTPQIECG 
ITRTTPATHE VIRANVHRSP MYSGQIQSTG PRYCPSIEDK IVKFGDRDGH QIFLEPEGLD 
DPTVYPNGIS TSLPEEVQRA ILKTIPGLER TEMLRPGYAI EYDHVDPREL EPTLQTKRLR 
GLFLAGQING TTGYEEAAAQ GLVAGLNAAL SAGGGDRAVF DRADGYLGVM IDDLVTRGIT 
EPYRMFTSRA EYRLTLRADN ADQRLTDKGL ALGCVGVERS AFHHDKMAAL SDAKALAQSL 
SITPNEAAKH GLALNRDGQR RSAFDLLSYP EIEWAQVRAI WPELGKVDPA IAVHVEIDAK 
YHVYLERQTA DVEAFRRDES LGLTDVDYAA VPGLSNEART RLERHRPHTV GQAGRLDGIT 
PAALGILAAY LRREQRKRKS TG